Variant report

Variant	rs73431767
Chromosome Location	chr7:119694559-119694560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:119694463..119697306-chr7:119701303..119702892,2	K562	blood:
2	chr7:119672017..119673637-chr7:119693207..119695015,2	MCF-7	breast:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10085539	1.00[EUR][1000 genomes]
rs10271592	1.00[EUR][1000 genomes]
rs10280627	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10280758	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17142497	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17142502	1.00[EUR][1000 genomes]
rs1989217	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2214705	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55997859	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57059935	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57917996	1.00[EUR][1000 genomes]
rs58149790	1.00[EUR][1000 genomes]
rs58183333	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58192464	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58717470	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59032327	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59303341	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59447974	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59585910	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60883005	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61485753	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61608442	1.00[EUR][1000 genomes]
rs6951188	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6962109	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6963042	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6966559	1.00[EUR][1000 genomes]
rs6967778	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6973663	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6975320	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6979258	1.00[EUR][1000 genomes]
rs6979383	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6979384	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6980091	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6980267	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6980402	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73423841	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73423843	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73423854	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73431712	0.83[ASN][1000 genomes]
rs73431755	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431758	0.94[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73431761	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431762	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431773	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431778	1.00[EUR][1000 genomes]
rs73431782	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431793	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431796	1.00[EUR][1000 genomes]
rs73433665	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73433666	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73441608	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73441610	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73441658	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73441659	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73441660	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73721050	1.00[EUR][1000 genomes]
rs73721058	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73721068	1.00[EUR][1000 genomes]
rs7782307	1.00[EUR][1000 genomes]
rs7785001	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7795185	1.00[EUR][1000 genomes]
rs7799093	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7805422	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7805993	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9655832	1.00[EUR][1000 genomes]
rs9656274	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470388	chr7:119464310-119790102	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2753623	chr7:119532049-119770049	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv831112	chr7:119585169-119776619	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1024054	chr7:119638121-119700508	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv831113	chr7:119683515-119886277	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv521233	chr7:119686018-119697233	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119690800-119695200	Enhancers	Muscle Satellite Cultured Cells	--
2	chr7:119691000-119695200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:119692600-119696000	Enhancers	Osteobl	bone
4	chr7:119692800-119695800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:119692800-119695800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr7:119692800-119696000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr7:119692800-119696000	Enhancers	HSMMtube	muscle
8	chr7:119693200-119694600	Enhancers	Ovary	ovary
9	chr7:119693200-119696000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:119693400-119695000	Weak transcription	NHEK	skin
11	chr7:119693400-119696000	Enhancers	NHLF	lung
12	chr7:119693400-119696200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr7:119693400-119696400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr7:119693600-119696200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr7:119693800-119694800	Enhancers	Adipose Nuclei	Adipose
16	chr7:119693800-119694800	Weak transcription	HMEC	breast
17	chr7:119693800-119695800	Enhancers	Placenta Amnion	Placenta Amnion
18	chr7:119694000-119695000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr7:119694000-119695000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr7:119694000-119696200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr7:119694200-119695000	Weak transcription	HSMM	muscle
22	chr7:119694400-119694800	Weak transcription	NH-A	brain
23	chr7:119694400-119695200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr7:119694400-119696600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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