Variant report

Variant	rs73431782
Chromosome Location	chr7:119701079-119701080
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:119694731..119696428-chr7:119698965..119701883,2	K562	blood:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10085539	0.88[EUR][1000 genomes]
rs10271592	0.88[EUR][1000 genomes]
rs10280627	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10280758	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17142497	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17142502	0.88[EUR][1000 genomes]
rs1989217	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2214705	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55997859	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57059935	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57917996	0.88[EUR][1000 genomes]
rs58149790	0.88[EUR][1000 genomes]
rs58183333	0.96[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58192464	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58717470	0.98[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59032327	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59303341	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59447974	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59585910	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60883005	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61485753	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61608442	0.88[EUR][1000 genomes]
rs6951188	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6962109	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6963042	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6966559	0.88[EUR][1000 genomes]
rs6967778	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6973663	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6975320	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6979258	0.88[EUR][1000 genomes]
rs6979383	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6979384	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6980091	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6980267	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6980402	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73423841	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73423843	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73423854	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73431712	0.83[ASN][1000 genomes]
rs73431755	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431758	0.92[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs73431761	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431762	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431766	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431767	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431773	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431778	0.88[EUR][1000 genomes]
rs73431793	0.98[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73431796	0.88[EUR][1000 genomes]
rs73433665	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73433666	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73441608	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73441610	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73441658	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73441659	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73441660	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73721050	0.88[EUR][1000 genomes]
rs73721058	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73721068	0.88[EUR][1000 genomes]
rs7782307	0.88[EUR][1000 genomes]
rs7785001	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7795185	0.88[EUR][1000 genomes]
rs7799093	0.99[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7805422	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7805993	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9655832	0.88[EUR][1000 genomes]
rs9656274	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470388	chr7:119464310-119790102	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2753623	chr7:119532049-119770049	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv831112	chr7:119585169-119776619	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv831113	chr7:119683515-119886277	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119696000-119704200	Weak transcription	NHLF	lung
2	chr7:119699600-119701200	Enhancers	HSMMtube	muscle
3	chr7:119699800-119701600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:119700000-119701200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:119700000-119701200	Enhancers	Adipose Nuclei	Adipose
6	chr7:119700200-119702600	Enhancers	GM12878-XiMat	blood
7	chr7:119700800-119701200	Enhancers	Placenta	Placenta
8	chr7:119700800-119704200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:119700800-119704200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr7:119700800-119704200	Weak transcription	HSMM	muscle
11	chr7:119701000-119701200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:119701000-119704400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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