Variant report

Variant	rs17144943
Chromosome Location	chr7:67382192-67382193
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13240999	0.98[AFR][1000 genomes]
rs13241113	0.98[AFR][1000 genomes]
rs17137400	0.98[AFR][1000 genomes]
rs17144952	0.98[AFR][1000 genomes]
rs34450046	0.98[AFR][1000 genomes]
rs34464135	0.98[AFR][1000 genomes]
rs35285670	0.98[AFR][1000 genomes]
rs35395078	0.98[AFR][1000 genomes]
rs35527248	0.98[AFR][1000 genomes]
rs62457596	0.98[AFR][1000 genomes]
rs62457599	0.98[AFR][1000 genomes]
rs62457600	0.98[AFR][1000 genomes]
rs62457601	0.98[AFR][1000 genomes]
rs62640512	0.98[AFR][1000 genomes]
rs6943649	0.98[AFR][1000 genomes]
rs6945224	0.98[AFR][1000 genomes]
rs6964247	0.98[AFR][1000 genomes]
rs7778901	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7810283	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs957354	0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027532	chr7:67261526-67387398	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:67380200-67383200	Enhancers	Brain Germinal Matrix	brain
2	chr7:67381400-67383200	Enhancers	Fetal Brain Male	brain
3	chr7:67381600-67382200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr7:67381600-67382200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr7:67381800-67382200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr7:67381800-67382200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr7:67381800-67382400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr7:67382000-67382200	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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