Variant report

Variant	rs17146454
Chromosome Location	chr7:22266931-22266932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10499545	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10499555	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11975330	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11980801	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12534599	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13239365	0.98[ASN][1000 genomes]
rs1345252	0.94[ASN][1000 genomes]
rs1543886	0.94[ASN][1000 genomes]
rs17146447	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17146449	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2528917	0.81[AMR][1000 genomes]
rs2686469	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs34078437	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62447587	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62448773	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62448775	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73278098	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7805084	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22241000-22267800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:22243400-22307200	Weak transcription	Thymus	Thymus
3	chr7:22254000-22274000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr7:22254600-22274000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:22259000-22270600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:22259000-22276400	Weak transcription	Esophagus	oesophagus
7	chr7:22259800-22281600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr7:22260000-22268600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr7:22260000-22269400	Weak transcription	Brain Anterior Caudate	brain
10	chr7:22260000-22269400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr7:22260800-22267200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr7:22260800-22268600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr7:22260800-22278400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:22260800-22281400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr7:22262200-22329000	Weak transcription	Primary B cells from cord blood	blood
16	chr7:22262400-22269400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr7:22262400-22279200	Weak transcription	GM12878-XiMat	blood
18	chr7:22262800-22268000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr7:22263000-22274000	Weak transcription	Liver	Liver
20	chr7:22263000-22276200	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr7:22263400-22268400	Weak transcription	Fetal Thymus	thymus
22	chr7:22263400-22281600	Weak transcription	Fetal Intestine Large	intestine
23	chr7:22263600-22270000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr7:22264000-22267600	Weak transcription	Brain Angular Gyrus	brain
25	chr7:22264400-22267400	Weak transcription	Brain Hippocampus Middle	brain
26	chr7:22264400-22269000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr7:22264400-22277200	Weak transcription	Pancreas	Pancrea
28	chr7:22264400-22291000	Weak transcription	Lung	lung
29	chr7:22264600-22270800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr7:22264800-22276200	Weak transcription	Fetal Intestine Small	intestine
31	chr7:22265400-22271000	Strong transcription	Dnd41	blood
32	chr7:22266200-22268800	Enhancers	Brain Substantia Nigra	brain
33	chr7:22266600-22267600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr7:22266600-22267600	Weak transcription	HepG2	liver

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