Variant report

Variant	rs7805084
Chromosome Location	chr7:22291876-22291877
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10227259	0.85[JPT][hapmap]
rs10242605	0.88[JPT][hapmap]
rs10242851	0.85[JPT][hapmap]
rs10268485	0.88[JPT][hapmap]
rs10276593	0.80[JPT][hapmap]
rs10499545	0.85[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.89[MEX][hapmap];0.84[TSI][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10499555	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11975330	0.85[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11980801	0.93[CHB][hapmap];0.85[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];0.80[TSI][hapmap];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12333620	0.81[JPT][hapmap]
rs12534599	0.85[CEU][hapmap];0.93[CHB][hapmap];0.85[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.84[TSI][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13239365	1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs1345252	0.93[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.80[MEX][hapmap];0.90[ASN][1000 genomes]
rs1543886	0.93[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs1568571	0.80[JPT][hapmap]
rs1568572	0.80[JPT][hapmap]
rs1636895	0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17146447	0.85[CEU][hapmap];0.93[CHB][hapmap];0.85[CHD][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];0.84[TSI][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17146449	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17146454	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17146497	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1798803	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2158877	0.81[CEU][hapmap];0.93[CHB][hapmap];0.82[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.87[ASN][1000 genomes]
rs2256891	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2528913	0.81[CEU][hapmap];0.93[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2528914	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2528916	0.93[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.85[ASN][1000 genomes]
rs2528917	0.86[CHB][hapmap];0.82[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.81[AMR][1000 genomes]
rs2528918	0.81[CEU][hapmap];0.93[CHB][hapmap];0.83[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2686469	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2686499	0.81[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs2686528	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs34078437	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62447068	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62447587	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62448773	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62448775	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73278098	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7779510	0.88[JPT][hapmap]
rs7796489	0.88[JPT][hapmap]
rs7798671	0.88[JPT][hapmap]
rs7799625	0.80[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7805084	CCDC126	cis	parietal	SCAN

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22243400-22307200	Weak transcription	Thymus	Thymus
2	chr7:22262200-22329000	Weak transcription	Primary B cells from cord blood	blood
3	chr7:22276600-22295600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:22278600-22325800	Weak transcription	Liver	Liver
5	chr7:22278800-22310800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:22279000-22297000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:22282200-22295000	Weak transcription	Spleen	Spleen
8	chr7:22282200-22298600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr7:22282200-22309000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr7:22282200-22364400	Weak transcription	Esophagus	oesophagus
11	chr7:22285000-22292600	Weak transcription	HepG2	liver
12	chr7:22286600-22294400	Weak transcription	Fetal Intestine Large	intestine
13	chr7:22286600-22295400	Strong transcription	Dnd41	blood
14	chr7:22287200-22295600	Weak transcription	Fetal Intestine Small	intestine
15	chr7:22287400-22299600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr7:22288000-22292000	Enhancers	Brain Substantia Nigra	brain
17	chr7:22289000-22292600	Weak transcription	Right Atrium	heart
18	chr7:22289400-22292600	Enhancers	Brain Cingulate Gyrus	brain
19	chr7:22289800-22293200	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr7:22290000-22293200	Enhancers	Brain Anterior Caudate	brain
21	chr7:22290000-22293200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr7:22290200-22303800	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr7:22290400-22292200	Enhancers	Brain Angular Gyrus	brain
24	chr7:22290400-22292600	Enhancers	Brain Hippocampus Middle	brain
25	chr7:22290400-22292800	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr7:22290400-22292800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr7:22290400-22293200	Enhancers	Brain Germinal Matrix	brain
28	chr7:22290800-22292000	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr7:22290800-22292000	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr7:22290800-22292000	Enhancers	Fetal Kidney	kidney
31	chr7:22290800-22292000	Enhancers	Pancreas	Pancrea
32	chr7:22290800-22292400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr7:22290800-22292800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr7:22290800-22292800	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr7:22290800-22292800	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr7:22290800-22293000	Enhancers	H1 Cell Line	embryonic stem cell
37	chr7:22290800-22293000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr7:22290800-22293000	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr7:22290800-22293400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr7:22290800-22295600	Weak transcription	Duodenum Mucosa	Duodenum
41	chr7:22291000-22292000	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr7:22291000-22292400	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr7:22291000-22292800	Enhancers	H9 Cell Line	embryonic stem cell
44	chr7:22291000-22293000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr7:22291000-22293400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr7:22291200-22302600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr7:22291400-22292000	Enhancers	Fetal Thymus	thymus
48	chr7:22291600-22292000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
49	chr7:22291800-22292000	Enhancers	Left Ventricle	heart
50	chr7:22291800-22308200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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