Variant report

Variant	rs7799625
Chromosome Location	chr7:22378423-22378424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:22377860..22380103-chr7:22388020..22389955,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10227259	0.95[CEU][hapmap];0.85[JPT][hapmap];0.83[EUR][1000 genomes]
rs10233668	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10238401	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10242605	0.90[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs10242851	0.90[CEU][hapmap];0.85[JPT][hapmap];0.83[EUR][1000 genomes]
rs10243405	0.92[YRI][hapmap]
rs10264609	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10268485	0.90[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs10276593	0.95[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12333620	1.00[ASW][hapmap];0.95[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];0.87[JPT][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1522280	0.86[YRI][hapmap]
rs1568571	0.95[CEU][hapmap];0.93[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1568572	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1636895	0.80[JPT][hapmap]
rs17146676	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2158877	0.80[JPT][hapmap]
rs2256891	0.80[JPT][hapmap]
rs2528913	0.80[JPT][hapmap]
rs2528916	0.80[JPT][hapmap]
rs2528918	0.80[JPT][hapmap]
rs2686528	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs28503868	0.81[EUR][1000 genomes]
rs28656461	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4337997	0.85[GIH][hapmap]
rs62447069	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62447095	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62447097	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62447098	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62447101	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6461643	0.81[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6968552	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7779510	0.90[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs7796489	0.90[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs7798671	0.90[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs7805084	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830923	chr7:22316841-22494973	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1792359	chr7:22377636-22391198	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22369400-22394800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:22370000-22383800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:22370000-22384000	Weak transcription	Spleen	Spleen
4	chr7:22370200-22390400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:22370400-22380200	Weak transcription	Brain Angular Gyrus	brain
6	chr7:22370800-22384000	Weak transcription	Left Ventricle	heart
7	chr7:22372200-22383800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:22372600-22384400	Weak transcription	NHEK	skin
9	chr7:22373400-22379200	Genic enhancers	HepG2	liver
10	chr7:22373400-22381400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr7:22373400-22384400	Weak transcription	Thymus	Thymus
12	chr7:22373800-22380400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr7:22373800-22383800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:22374800-22378600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr7:22374800-22380200	Weak transcription	Fetal Intestine Large	intestine
16	chr7:22375200-22378600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr7:22375200-22378600	Weak transcription	K562	blood
18	chr7:22375200-22381400	Weak transcription	Esophagus	oesophagus
19	chr7:22375400-22380000	Weak transcription	Stomach Mucosa	stomach
20	chr7:22375600-22378800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr7:22376400-22379400	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr7:22376800-22379000	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr7:22377000-22379400	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr7:22377200-22380200	Enhancers	H9 Cell Line	embryonic stem cell
25	chr7:22377200-22386600	Enhancers	Liver	Liver
26	chr7:22377400-22379200	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr7:22377400-22379600	Weak transcription	Fetal Intestine Small	intestine
28	chr7:22377600-22379000	Strong transcription	Dnd41	blood
29	chr7:22377800-22379400	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr7:22378000-22379000	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr7:22378000-22379000	Enhancers	Brain Anterior Caudate	brain
32	chr7:22378200-22379200	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr7:22378400-22378800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr7:22378400-22379000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr7:22378400-22379200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr7:22378400-22380400	Enhancers	Lung	lung
37	chr7:22378400-22380800	Genic enhancers	Fetal Thymus	thymus
38	chr7:22378400-22381200	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr7:22378400-22382000	Enhancers	Pancreas	Pancrea

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