Variant report

Variant	rs62447095
Chromosome Location	chr7:22357488-22357489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:22356795..22360587-chr7:22360878..22363987,3	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10227259	0.88[EUR][1000 genomes]
rs10233668	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10238401	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10242605	0.88[EUR][1000 genomes]
rs10242851	0.88[EUR][1000 genomes]
rs10264609	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10268485	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10276593	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12333620	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1568571	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1568572	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17146676	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28656461	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62447069	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62447097	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62447098	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62447101	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6461643	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6968552	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7779510	0.88[EUR][1000 genomes]
rs7796489	0.88[EUR][1000 genomes]
rs7798671	0.88[EUR][1000 genomes]
rs7799625	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830923	chr7:22316841-22494973	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22282200-22364400	Weak transcription	Esophagus	oesophagus
2	chr7:22327600-22359600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:22331400-22359600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr7:22333400-22361800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr7:22337000-22357800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr7:22337000-22362600	Weak transcription	Brain Anterior Caudate	brain
7	chr7:22340600-22369800	Weak transcription	Gastric	stomach
8	chr7:22340800-22365000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:22342200-22359600	Weak transcription	Pancreas	Pancrea
10	chr7:22342200-22373200	Weak transcription	Lung	lung
11	chr7:22342800-22359800	Weak transcription	Fetal Intestine Small	intestine
12	chr7:22344200-22357600	Strong transcription	Fetal Thymus	thymus
13	chr7:22344600-22358000	Strong transcription	Dnd41	blood
14	chr7:22346600-22359000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr7:22346600-22359600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr7:22346600-22359800	Weak transcription	Brain Angular Gyrus	brain
17	chr7:22347200-22359600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr7:22348000-22359400	Weak transcription	NHEK	skin
19	chr7:22348000-22359600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr7:22348000-22363800	Weak transcription	GM12878-XiMat	blood
21	chr7:22348200-22358000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr7:22348200-22359400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr7:22348200-22359600	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr7:22352800-22364600	Weak transcription	Stomach Mucosa	stomach
25	chr7:22354000-22361600	Weak transcription	Primary B cells from cord blood	blood
26	chr7:22354600-22359200	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr7:22354800-22358000	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr7:22354800-22358800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr7:22354800-22359000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr7:22354800-22362200	Weak transcription	Thymus	Thymus
31	chr7:22354800-22366400	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr7:22355000-22357600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr7:22355000-22357600	Weak transcription	Liver	Liver
34	chr7:22355000-22358400	Weak transcription	Duodenum Mucosa	Duodenum
35	chr7:22355000-22359400	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr7:22355000-22359400	Weak transcription	Fetal Intestine Large	intestine
37	chr7:22355000-22359600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr7:22355000-22362000	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr7:22355000-22371800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr7:22357000-22359600	Weak transcription	HepG2	liver
41	chr7:22357200-22358400	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links