Variant report

Variant	rs62447098
Chromosome Location	chr7:22364434-22364435
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:22364411..22365165-chr9:32383983..32384765,2	HCT-116	colon:
2	chr7:22362521..22364529-chr7:22368458..22371162,2	K562	blood:

Variant related genes	Relation type
ENSG00000122729	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10227259	0.87[EUR][1000 genomes]
rs10233668	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10238401	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10240399	0.84[AFR][1000 genomes]
rs10242605	0.87[EUR][1000 genomes]
rs10242851	0.87[EUR][1000 genomes]
rs10264609	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10268485	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10276593	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12333620	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1568571	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1568572	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17146676	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28656461	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62447069	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62447095	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62447097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62447101	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6461643	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6968552	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7779510	0.87[EUR][1000 genomes]
rs7796489	0.86[EUR][1000 genomes]
rs7798671	0.87[EUR][1000 genomes]
rs7799625	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830923	chr7:22316841-22494973	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22340600-22369800	Weak transcription	Gastric	stomach
2	chr7:22340800-22365000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:22342200-22373200	Weak transcription	Lung	lung
4	chr7:22352800-22364600	Weak transcription	Stomach Mucosa	stomach
5	chr7:22354800-22366400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr7:22355000-22371800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr7:22358600-22369400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:22360200-22368200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:22360200-22368200	Weak transcription	Fetal Intestine Small	intestine
10	chr7:22360400-22366000	Weak transcription	Fetal Intestine Large	intestine
11	chr7:22360600-22367200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr7:22360600-22368200	Weak transcription	K562	blood
13	chr7:22360600-22372400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr7:22360800-22368400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr7:22362000-22366000	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr7:22362400-22365200	Enhancers	Dnd41	blood
17	chr7:22362800-22368400	Weak transcription	Thymus	Thymus
18	chr7:22363000-22364800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr7:22363000-22367000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr7:22363400-22364600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr7:22363600-22364800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr7:22364000-22364800	Weak transcription	HepG2	liver
23	chr7:22364000-22366800	Weak transcription	GM12878-XiMat	blood
24	chr7:22364400-22364600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr7:22364400-22364800	Enhancers	Pancreas	Pancrea
26	chr7:22364400-22365000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr7:22364400-22365400	Enhancers	Esophagus	oesophagus
28	chr7:22364400-22365600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr7:22364400-22366000	Enhancers	Fetal Thymus	thymus

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