Variant report

Variant	rs10264609
Chromosome Location	chr7:22368434-22368435
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:22366930..22368967-chr7:22370574..22372590,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10227259	0.86[EUR][1000 genomes]
rs10233668	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10238401	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10242605	0.86[EUR][1000 genomes]
rs10242851	0.86[EUR][1000 genomes]
rs10268485	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10276593	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12333620	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1568571	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1568572	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17146676	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28503868	0.81[EUR][1000 genomes]
rs28656461	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62447069	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62447095	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62447097	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62447098	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62447101	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6461643	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6968552	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7779510	0.86[EUR][1000 genomes]
rs7796489	0.86[EUR][1000 genomes]
rs7798671	0.86[EUR][1000 genomes]
rs7799625	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830923	chr7:22316841-22494973	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22340600-22369800	Weak transcription	Gastric	stomach
2	chr7:22342200-22373200	Weak transcription	Lung	lung
3	chr7:22355000-22371800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:22358600-22369400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:22360600-22372400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:22365000-22369400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:22365000-22369400	Weak transcription	Stomach Mucosa	stomach
8	chr7:22365000-22369600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr7:22365200-22369400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:22365400-22369400	Weak transcription	Esophagus	oesophagus
11	chr7:22365400-22371800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:22367000-22369200	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr7:22367200-22369200	Enhancers	HepG2	liver
14	chr7:22367200-22371200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr7:22367800-22368600	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr7:22367800-22371600	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr7:22368000-22374000	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr7:22368000-22374800	Enhancers	Fetal Intestine Large	intestine
19	chr7:22368200-22369800	Weak transcription	Adipose Nuclei	Adipose
20	chr7:22368200-22370200	Enhancers	K562	blood
21	chr7:22368200-22370800	Enhancers	H9 Cell Line	embryonic stem cell
22	chr7:22368200-22371200	Enhancers	Fetal Intestine Small	intestine
23	chr7:22368200-22374600	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr7:22368400-22368600	Enhancers	Pancreas	Pancrea
25	chr7:22368400-22368600	Enhancers	Small Intestine	intestine
26	chr7:22368400-22368600	Enhancers	Thymus	Thymus
27	chr7:22368400-22368600	Enhancers	Spleen	Spleen
28	chr7:22368400-22369000	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr7:22368400-22369000	Weak transcription	Dnd41	blood
30	chr7:22368400-22370800	Enhancers	Fetal Thymus	thymus
31	chr7:22368400-22371600	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr7:22368400-22371600	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr7:22368400-22372200	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr7:22368400-22374000	Enhancers	HUES6 Cell Line	embryonic stem cell

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