Variant report

Variant	rs1568571
Chromosome Location	chr7:22374924-22374925
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:22374454..22376748-chr7:22396057..22398192,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136237	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10227259	0.95[CEU][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes]
rs10233668	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10238401	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10242605	0.95[CEU][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.84[EUR][1000 genomes]
rs10242851	0.95[CEU][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes]
rs10264609	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10268485	0.95[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs10276593	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12333620	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1568572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1636895	0.80[JPT][hapmap]
rs17146676	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17146709	0.80[CEU][hapmap]
rs2158877	0.80[JPT][hapmap]
rs2256891	0.80[JPT][hapmap]
rs2528913	0.80[JPT][hapmap]
rs2528916	0.80[JPT][hapmap]
rs2528918	0.80[JPT][hapmap]
rs2686528	0.90[CEU][hapmap];0.87[JPT][hapmap]
rs28503868	0.81[EUR][1000 genomes]
rs28656461	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4337997	0.80[CEU][hapmap];0.85[GIH][hapmap]
rs4602791	0.80[CEU][hapmap]
rs62447069	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62447095	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62447097	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62447098	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62447101	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6461643	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6968552	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7779510	0.95[CEU][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.84[EUR][1000 genomes]
rs7796489	0.95[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs7798671	0.95[CEU][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.84[EUR][1000 genomes]
rs7799625	0.95[CEU][hapmap];0.93[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7805084	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830923	chr7:22316841-22494973	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22369400-22394800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:22370000-22383800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:22370000-22384000	Weak transcription	Spleen	Spleen
4	chr7:22370200-22390400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:22370400-22380200	Weak transcription	Brain Angular Gyrus	brain
6	chr7:22370800-22376400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:22370800-22377200	Weak transcription	Liver	Liver
8	chr7:22370800-22384000	Weak transcription	Left Ventricle	heart
9	chr7:22372000-22375400	Enhancers	Stomach Mucosa	stomach
10	chr7:22372000-22375600	Enhancers	Duodenum Mucosa	Duodenum
11	chr7:22372200-22375200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr7:22372200-22383800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr7:22372600-22375000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr7:22372600-22375000	Weak transcription	Fetal Intestine Small	intestine
15	chr7:22372600-22384400	Weak transcription	NHEK	skin
16	chr7:22373200-22375200	Enhancers	Pancreas	Pancrea
17	chr7:22373400-22376800	Enhancers	Dnd41	blood
18	chr7:22373400-22379200	Genic enhancers	HepG2	liver
19	chr7:22373400-22381400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr7:22373400-22384400	Weak transcription	Thymus	Thymus
21	chr7:22373600-22375200	Enhancers	K562	blood
22	chr7:22373800-22378400	Weak transcription	Lung	lung
23	chr7:22373800-22380400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr7:22373800-22383800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr7:22374000-22377400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr7:22374000-22377400	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr7:22374200-22376400	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr7:22374400-22375200	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr7:22374400-22377000	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr7:22374600-22375200	Enhancers	Esophagus	oesophagus
31	chr7:22374600-22376800	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr7:22374800-22376000	Weak transcription	Fetal Thymus	thymus
33	chr7:22374800-22376400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr7:22374800-22376400	Enhancers	GM12878-XiMat	blood
35	chr7:22374800-22378200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr7:22374800-22378400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr7:22374800-22378600	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr7:22374800-22380200	Weak transcription	Fetal Intestine Large	intestine

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