Variant report

Variant	rs1636895
Chromosome Location	chr7:22334484-22334485
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:22330491..22332557-chr7:22333891..22336591,2	K562	blood:

Variant related genes	Relation type
ENSG00000136237	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10227259	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs10242605	0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs10242851	0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs10268485	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs10276593	0.80[JPT][hapmap]
rs10499545	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs11975330	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs11980801	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs12333620	0.81[JPT][hapmap]
rs12534599	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs13239365	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs1345252	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs1543886	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs1568571	0.80[JPT][hapmap]
rs1568572	0.81[JPT][hapmap]
rs17146447	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs17146497	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1798803	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2158877	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2256891	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2528644	0.87[ASN][1000 genomes]
rs2528913	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2528914	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2528916	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2528917	0.82[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2528918	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2686469	0.81[ASN][1000 genomes]
rs2686499	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2686528	0.93[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs62447068	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7779510	0.86[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs7796489	0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs7798671	0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs7799625	0.80[JPT][hapmap]
rs7805084	0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830923	chr7:22316841-22494973	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22282200-22364400	Weak transcription	Esophagus	oesophagus
2	chr7:22310000-22335600	Weak transcription	Pancreas	Pancrea
3	chr7:22310000-22343400	Weak transcription	Spleen	Spleen
4	chr7:22318800-22340200	Weak transcription	Stomach Mucosa	stomach
5	chr7:22319000-22336000	Weak transcription	Lung	lung
6	chr7:22320800-22345400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:22321000-22341600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:22321000-22346800	Weak transcription	NHEK	skin
9	chr7:22326800-22357000	Strong transcription	HepG2	liver
10	chr7:22327400-22345400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr7:22327600-22359600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr7:22327800-22350400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:22329200-22334800	Strong transcription	Liver	Liver
14	chr7:22329600-22347000	Weak transcription	Colonic Mucosa	Colon
15	chr7:22329800-22345400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:22329800-22346200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr7:22330000-22345200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr7:22330000-22345200	Weak transcription	Primary B cells from cord blood	blood
19	chr7:22330000-22347000	Weak transcription	GM12878-XiMat	blood
20	chr7:22330800-22345400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr7:22331000-22336600	Enhancers	Brain Hippocampus Middle	brain
22	chr7:22331400-22359600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr7:22332600-22345200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr7:22332800-22335400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:22332800-22336000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr7:22332800-22340400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr7:22333000-22345200	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr7:22333200-22336800	Strong transcription	Fetal Intestine Large	intestine
29	chr7:22333400-22337600	Genic enhancers	Dnd41	blood
30	chr7:22333400-22349600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:22333400-22361800	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr7:22333800-22334600	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr7:22334000-22335400	Weak transcription	Brain Cingulate Gyrus	brain
34	chr7:22334000-22340200	Weak transcription	Thymus	Thymus
35	chr7:22334400-22335400	Weak transcription	Brain Angular Gyrus	brain
36	chr7:22334400-22335400	Weak transcription	Brain Anterior Caudate	brain
37	chr7:22334400-22335400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr7:22334400-22335400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr7:22334400-22335400	Weak transcription	Brain Substantia Nigra	brain
40	chr7:22334400-22335600	Weak transcription	Duodenum Mucosa	Duodenum
41	chr7:22334400-22335600	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr7:22334400-22336200	Strong transcription	Fetal Thymus	thymus
43	chr7:22334400-22337800	Weak transcription	Fetal Intestine Small	intestine
44	chr7:22334400-22341800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links