Variant report

Variant	rs28656461
Chromosome Location	chr7:22359206-22359207
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:22356795..22360587-chr7:22360878..22363987,3	K562	blood:
2	chr7:22334577..22337083-chr7:22358789..22361127,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10227259	0.87[EUR][1000 genomes]
rs10233668	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10238401	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10240399	0.88[AFR][1000 genomes]
rs10242605	0.87[EUR][1000 genomes]
rs10242851	0.87[EUR][1000 genomes]
rs10264609	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10268485	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10276593	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12333620	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1568571	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1568572	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17146676	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62447069	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62447095	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62447097	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62447098	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62447101	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6461643	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6968552	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7779510	0.87[EUR][1000 genomes]
rs7796489	0.86[EUR][1000 genomes]
rs7798671	0.87[EUR][1000 genomes]
rs7799625	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830923	chr7:22316841-22494973	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22282200-22364400	Weak transcription	Esophagus	oesophagus
2	chr7:22327600-22359600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:22331400-22359600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr7:22333400-22361800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr7:22337000-22362600	Weak transcription	Brain Anterior Caudate	brain
6	chr7:22340600-22369800	Weak transcription	Gastric	stomach
7	chr7:22340800-22365000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:22342200-22359600	Weak transcription	Pancreas	Pancrea
9	chr7:22342200-22373200	Weak transcription	Lung	lung
10	chr7:22342800-22359800	Weak transcription	Fetal Intestine Small	intestine
11	chr7:22346600-22359600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr7:22346600-22359800	Weak transcription	Brain Angular Gyrus	brain
13	chr7:22347200-22359600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:22348000-22359400	Weak transcription	NHEK	skin
15	chr7:22348000-22359600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr7:22348000-22363800	Weak transcription	GM12878-XiMat	blood
17	chr7:22348200-22359400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr7:22348200-22359600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr7:22352800-22364600	Weak transcription	Stomach Mucosa	stomach
20	chr7:22354000-22361600	Weak transcription	Primary B cells from cord blood	blood
21	chr7:22354800-22362200	Weak transcription	Thymus	Thymus
22	chr7:22354800-22366400	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr7:22355000-22359400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr7:22355000-22359400	Weak transcription	Fetal Intestine Large	intestine
25	chr7:22355000-22359600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr7:22355000-22362000	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr7:22355000-22371800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr7:22357000-22359600	Weak transcription	HepG2	liver
29	chr7:22358000-22359600	Weak transcription	Dnd41	blood
30	chr7:22358400-22359400	Weak transcription	Fetal Muscle Leg	muscle
31	chr7:22358400-22359400	Weak transcription	K562	blood
32	chr7:22358400-22359600	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr7:22358400-22359600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr7:22358600-22359600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr7:22358600-22362200	Weak transcription	Fetal Thymus	thymus
36	chr7:22358600-22369400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr7:22358800-22360200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr7:22359000-22359600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr7:22359000-22360200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr7:22359000-22360200	Enhancers	Muscle Satellite Cultured Cells	--
41	chr7:22359000-22360400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr7:22359200-22360800	Enhancers	HUES64 Cell Line	embryonic stem cell

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