Variant report

Variant	rs17148255
Chromosome Location	chr11:85336904-85336905
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85335097..85341629-chr11:85372332..85377145,15	MCF-7	breast:
2	chr11:85332546..85334884-chr11:85335363..85336942,2	MCF-7	breast:
3	chr11:85336278..85337921-chr11:85339997..85342218,2	K562	blood:

Variant related genes	Relation type
ENSG00000137504	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12099140	0.97[AFR][1000 genomes]
rs12099145	0.83[AMR][1000 genomes]
rs17148234	0.83[AMR][1000 genomes]
rs17148242	0.83[AMR][1000 genomes]
rs17148259	0.97[AFR][1000 genomes]
rs17148267	0.94[AFR][1000 genomes]
rs17148285	0.83[AMR][1000 genomes]
rs17148301	0.83[AFR][1000 genomes]
rs55650249	0.96[AFR][1000 genomes]
rs56047795	0.83[AMR][1000 genomes]
rs57309067	0.83[AMR][1000 genomes]
rs57361884	0.83[AMR][1000 genomes]
rs58967928	0.97[AFR][1000 genomes]
rs61169921	0.83[AMR][1000 genomes]
rs61180955	0.83[AMR][1000 genomes]
rs61465434	0.83[AMR][1000 genomes]
rs7103387	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7113272	0.83[AFR][1000 genomes]
rs7116307	0.83[AFR][1000 genomes]
rs7116532	0.83[AMR][1000 genomes]
rs7116553	0.83[AMR][1000 genomes]
rs7942218	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv898047	chr11:85180409-85377707	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
6	nsv898048	chr11:85206156-85404138	Flanking Active TSS Genic enhancers Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85317800-85337600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:85320000-85337600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr11:85320000-85337600	Weak transcription	Psoas Muscle	Psoas
4	chr11:85323400-85337600	Weak transcription	Left Ventricle	heart
5	chr11:85323800-85337600	Weak transcription	Liver	Liver
6	chr11:85324800-85338000	Weak transcription	Fetal Brain Male	brain
7	chr11:85331200-85338200	Weak transcription	Lung	lung
8	chr11:85332200-85337600	Weak transcription	Brain Angular Gyrus	brain
9	chr11:85336000-85337400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr11:85336000-85341000	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr11:85336200-85337600	Enhancers	Fetal Lung	lung
12	chr11:85336200-85339000	Active TSS	Right Atrium	heart
13	chr11:85336200-85340600	Active TSS	Ovary	ovary
14	chr11:85336200-85341400	Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr11:85336400-85337600	Enhancers	Brain Hippocampus Middle	brain
16	chr11:85336400-85337600	Enhancers	Colon Smooth Muscle	Colon
17	chr11:85336400-85337600	Enhancers	Rectal Smooth Muscle	rectum
18	chr11:85336400-85337800	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr11:85336400-85340400	Active TSS	Aorta	Aorta
20	chr11:85336600-85337000	Active TSS	iPS-15b Cell Line	embryonic stem cell
21	chr11:85336600-85337000	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr11:85336600-85337000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:85336600-85337000	Enhancers	Brain Anterior Caudate	brain
24	chr11:85336600-85337000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr11:85336600-85337200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr11:85336600-85337400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:85336600-85337600	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr11:85336600-85338000	Weak transcription	GM12878-XiMat	blood
29	chr11:85336600-85338200	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr11:85336800-85337000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr11:85336800-85337000	Flanking Active TSS	Fetal Heart	heart
32	chr11:85336800-85337200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
33	chr11:85336800-85337200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr11:85336800-85337400	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr11:85336800-85337600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr11:85336800-85337600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr11:85336800-85337600	Enhancers	Fetal Stomach	stomach
38	chr11:85336800-85337800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr11:85336800-85338000	Enhancers	Brain Substantia Nigra	brain
40	chr11:85336800-85338000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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