Variant report

Variant	rs17148285
Chromosome Location	chr11:85359072-85359073
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85358423..85359199-chr16:31191271..31191859,2	Hela-S3	cervix:
2	chr11:85358442..85359214-chr19:47291368..47291935,2	NB4	blood:
3	chr11:85337127..85343160-chr11:85357064..85364111,20	MCF-7	breast:
4	chr11:85338390..85343522-chr11:85356567..85360273,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171204	Chromatin interaction
ENSG00000089280	Chromatin interaction
ENSG00000105281	Chromatin interaction
ENSG00000150672	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10501593	0.85[AMR][1000 genomes]
rs12099145	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17148234	1.00[AMR][1000 genomes]
rs17148242	1.00[AMR][1000 genomes]
rs17148255	0.83[AMR][1000 genomes]
rs56047795	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56687664	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs56838978	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs57309067	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57313830	0.85[AMR][1000 genomes]
rs57361884	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60192818	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs60734322	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs60865542	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs61169921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61180955	1.00[AMR][1000 genomes]
rs61198962	0.85[AMR][1000 genomes]
rs61465434	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6592254	0.85[AMR][1000 genomes]
rs6592256	0.85[AMR][1000 genomes]
rs6592257	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7103387	0.83[AMR][1000 genomes]
rs7116532	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7116553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7122987	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs744173	0.85[AMR][1000 genomes]
rs7938991	0.85[AMR][1000 genomes]
rs7942218	1.00[AMR][1000 genomes]
rs7949114	0.85[AMR][1000 genomes]
rs7952219	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv898047	chr11:85180409-85377707	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
6	nsv898048	chr11:85206156-85404138	Flanking Active TSS Genic enhancers Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85358000-85359800	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr11:85358000-85360000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:85358000-85360000	Active TSS	K562	blood
4	chr11:85358000-85360200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:85358200-85359400	Active TSS	Brain Germinal Matrix	brain
6	chr11:85358200-85359600	Active TSS	Colonic Mucosa	Colon
7	chr11:85358200-85359600	Active TSS	Right Ventricle	heart
8	chr11:85358200-85359800	Active TSS	H1 Cell Line	embryonic stem cell
9	chr11:85358200-85359800	Active TSS	H9 Cell Line	embryonic stem cell
10	chr11:85358200-85359800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:85358200-85359800	Flanking Active TSS	Primary T cells from cord blood	blood
12	chr11:85358200-85359800	Flanking Active TSS	Primary hematopoietic stem cells	blood
13	chr11:85358200-85359800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:85358200-85359800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:85358200-85359800	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr11:85358200-85359800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:85358200-85360000	Active TSS	iPS-18 Cell Line	embryonic stem cell
18	chr11:85358200-85360000	Active TSS	HMEC	breast
19	chr11:85358200-85360200	Active TSS	iPS-15b Cell Line	embryonic stem cell
20	chr11:85358200-85360200	Active TSS	NHDF-Ad	bronchial
21	chr11:85358200-85360400	Active TSS	HUES64 Cell Line	embryonic stem cell
22	chr11:85358200-85360400	Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr11:85358400-85359200	Active TSS	Monocytes-CD14+_RO01746	blood
24	chr11:85358400-85359400	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
25	chr11:85358400-85359400	Active TSS	Brain Angular Gyrus	brain
26	chr11:85358400-85359400	Active TSS	Colon Smooth Muscle	Colon
27	chr11:85358400-85359400	Active TSS	Duodenum Mucosa	Duodenum
28	chr11:85358400-85359400	Active TSS	Esophagus	oesophagus
29	chr11:85358400-85359400	Active TSS	Fetal Brain Male	brain
30	chr11:85358400-85359400	Active TSS	Placenta Amnion	Placenta Amnion
31	chr11:85358400-85359600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:85358400-85359600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr11:85358400-85359600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr11:85358400-85359600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
35	chr11:85358400-85359600	Active TSS	Muscle Satellite Cultured Cells	--
36	chr11:85358400-85359600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr11:85358400-85359600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr11:85358400-85359600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
39	chr11:85358400-85359600	Active TSS	Brain Anterior Caudate	brain
40	chr11:85358400-85359600	Active TSS	Brain Cingulate Gyrus	brain
41	chr11:85358400-85359600	Active TSS	Fetal Heart	heart
42	chr11:85358400-85359600	Active TSS	Fetal Kidney	kidney
43	chr11:85358400-85359600	Active TSS	Fetal Lung	lung
44	chr11:85358400-85359600	Active TSS	Left Ventricle	heart
45	chr11:85358400-85359600	Active TSS	Pancreas	Pancrea
46	chr11:85358400-85359600	Active TSS	Stomach Mucosa	stomach
47	chr11:85358400-85359600	Active TSS	HSMMtube	muscle
48	chr11:85358400-85359800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr11:85358400-85359800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr11:85358400-85359800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell

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