Variant report

Variant	rs6592254
Chromosome Location	chr11:85318450-85318451
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:85317935..85319449-chr11:85332481..85334834,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10501593	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12099145	0.85[AMR][1000 genomes]
rs17148234	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17148242	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17148285	0.85[AMR][1000 genomes]
rs17148316	0.87[AMR][1000 genomes]
rs56047795	0.85[AMR][1000 genomes]
rs56401259	0.87[AMR][1000 genomes]
rs56838978	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57309067	0.85[AMR][1000 genomes]
rs57313830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57361884	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs60032790	0.87[AMR][1000 genomes]
rs60192818	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60734322	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61169921	0.85[AMR][1000 genomes]
rs61180955	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs61198962	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61465434	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6592256	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6592257	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7116532	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7116553	0.85[AMR][1000 genomes]
rs7122987	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs744173	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7938991	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7942218	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7949114	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7952219	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv898047	chr11:85180409-85377707	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
6	nsv898048	chr11:85206156-85404138	Flanking Active TSS Genic enhancers Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85316200-85319800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr11:85316400-85319200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr11:85317800-85337600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:85318400-85318800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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