Variant report

Variant	rs60032790
Chromosome Location	chr11:85385058-85385059
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10501593	0.87[AMR][1000 genomes]
rs17148316	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56401259	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56687664	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs56838978	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs57313830	0.87[AMR][1000 genomes]
rs60192818	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs60734322	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs60865542	0.87[AMR][1000 genomes]
rs61198962	0.87[AMR][1000 genomes]
rs6592254	0.87[AMR][1000 genomes]
rs6592256	0.87[AMR][1000 genomes]
rs6592257	0.87[AMR][1000 genomes]
rs7122987	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs744173	0.87[AMR][1000 genomes]
rs7938991	0.87[AMR][1000 genomes]
rs7946793	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7949114	0.87[AMR][1000 genomes]
rs7952219	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	nsv898048	chr11:85206156-85404138	Flanking Active TSS Genic enhancers Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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