Variant report

Variant	rs7946793
Chromosome Location	chr11:85370181-85370182
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85369773..85371949-chr3:161088766..161091277,2	MCF-7	breast:
2	chr11:85368615..85371955-chr11:85778453..85780555,3	MCF-7	breast:
3	chr11:85369899..85372804-chr11:85545062..85546579,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000073921	Chromatin interaction
ENSG00000196542	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10501593	0.92[YRI][hapmap]
rs12099145	0.92[YRI][hapmap]
rs17148242	0.84[YRI][hapmap]
rs17148316	0.88[YRI][hapmap];0.99[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs56401259	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs56687664	0.87[AFR][1000 genomes]
rs56838978	0.90[AFR][1000 genomes]
rs60032790	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs60192818	0.90[AFR][1000 genomes]
rs60734322	0.90[AFR][1000 genomes]
rs60865542	0.83[AFR][1000 genomes]
rs6592257	0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs7122987	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs744173	0.81[YRI][hapmap]
rs7938991	0.92[YRI][hapmap]
rs7942218	0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv898047	chr11:85180409-85377707	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
6	nsv898048	chr11:85206156-85404138	Flanking Active TSS Genic enhancers Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85359400-85370400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:85359400-85373000	Weak transcription	Small Intestine	intestine
3	chr11:85359400-85374000	Weak transcription	Esophagus	oesophagus
4	chr11:85359600-85373000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:85359600-85373400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:85359800-85372600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:85359800-85373000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:85359800-85373000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr11:85359800-85373000	Weak transcription	Ovary	ovary
10	chr11:85359800-85373200	Weak transcription	Fetal Stomach	stomach
11	chr11:85360000-85373000	Weak transcription	Colonic Mucosa	Colon
12	chr11:85360200-85371200	Weak transcription	Fetal Brain Male	brain
13	chr11:85360200-85372200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:85360200-85373000	Weak transcription	Thymus	Thymus
15	chr11:85360400-85373000	Weak transcription	Right Ventricle	heart
16	chr11:85360400-85373200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:85360400-85374000	Weak transcription	Lung	lung
18	chr11:85360400-85374000	Weak transcription	Pancreas	Pancrea
19	chr11:85360400-85374200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr11:85360600-85370400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr11:85360600-85371400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr11:85360800-85370200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr11:85360800-85372600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr11:85360800-85372600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr11:85361000-85370400	Weak transcription	Fetal Intestine Small	intestine
26	chr11:85361400-85373000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr11:85361800-85370400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:85362400-85372600	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr11:85362600-85374200	Weak transcription	Spleen	Spleen
30	chr11:85362800-85371000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr11:85362800-85371000	Weak transcription	Rectal Smooth Muscle	rectum
32	chr11:85362800-85372000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
33	chr11:85362800-85373400	Weak transcription	Left Ventricle	heart
34	chr11:85363000-85373000	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr11:85363200-85370400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr11:85363200-85373000	Weak transcription	Aorta	Aorta
37	chr11:85363200-85373000	Weak transcription	Fetal Muscle Leg	muscle
38	chr11:85363800-85371000	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chr11:85364000-85370200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr11:85364000-85370400	Strong transcription	HSMM	muscle
41	chr11:85364000-85373000	Strong transcription	Placenta	Placenta
42	chr11:85364200-85370400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr11:85364200-85371000	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr11:85364400-85370400	Strong transcription	NH-A	brain
45	chr11:85364400-85372600	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr11:85364600-85371200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr11:85364600-85371800	Strong transcription	Fetal Thymus	thymus
48	chr11:85364600-85372000	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr11:85364600-85372000	Weak transcription	Fetal Kidney	kidney
50	chr11:85364600-85372200	Strong transcription	Monocytes-CD14+_RO01746	blood

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