Variant report

Variant	rs60192818
Chromosome Location	chr11:85350099-85350100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85337741..85343545-chr11:85345780..85354384,11	MCF-7	breast:
2	chr11:85347047..85348575-chr11:85349849..85352834,2	MCF-7	breast:
3	chr11:85338250..85341391-chr11:85347882..85353212,5	MCF-7	breast:
4	chr11:85349221..85351425-chr11:85352555..85354593,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150672	Chromatin interaction
ENSG00000171204	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10501593	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12099145	0.85[AMR][1000 genomes]
rs17148234	0.85[AMR][1000 genomes]
rs17148242	0.85[AMR][1000 genomes]
rs17148285	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17148316	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs56047795	0.85[AMR][1000 genomes]
rs56401259	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs56838978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57309067	0.85[AMR][1000 genomes]
rs57313830	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57361884	0.85[AMR][1000 genomes]
rs60032790	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs60734322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60865542	0.82[AFR][1000 genomes]
rs61169921	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs61180955	0.85[AMR][1000 genomes]
rs61198962	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61465434	0.85[AMR][1000 genomes]
rs6592254	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6592256	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6592257	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7116532	0.85[AMR][1000 genomes]
rs7116553	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7122987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs744173	1.00[AMR][1000 genomes]
rs7938991	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7942218	0.85[AMR][1000 genomes]
rs7946793	0.90[AFR][1000 genomes]
rs7949114	1.00[AMR][1000 genomes]
rs7952219	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv898047	chr11:85180409-85377707	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
6	nsv898048	chr11:85206156-85404138	Flanking Active TSS Genic enhancers Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85340200-85351800	Weak transcription	Gastric	stomach
2	chr11:85340200-85352400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:85340400-85351000	Weak transcription	Esophagus	oesophagus
4	chr11:85340600-85352800	Weak transcription	Fetal Brain Male	brain
5	chr11:85340600-85358200	Weak transcription	Aorta	Aorta
6	chr11:85340800-85358200	Weak transcription	Fetal Stomach	stomach
7	chr11:85340800-85358200	Weak transcription	Right Ventricle	heart
8	chr11:85340800-85358200	Weak transcription	HSMMtube	muscle
9	chr11:85341000-85351600	Weak transcription	Thymus	Thymus
10	chr11:85341200-85354400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:85341200-85358000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr11:85341200-85358000	Weak transcription	NHLF	lung
13	chr11:85341200-85358200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:85341200-85358200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr11:85341200-85358200	Weak transcription	Spleen	Spleen
16	chr11:85341200-85358400	Weak transcription	Small Intestine	intestine
17	chr11:85341400-85354200	Weak transcription	Fetal Intestine Small	intestine
18	chr11:85341800-85353000	Weak transcription	Fetal Heart	heart
19	chr11:85342200-85358200	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr11:85342400-85352600	Weak transcription	Psoas Muscle	Psoas
21	chr11:85342800-85352600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr11:85344400-85350400	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr11:85344600-85351000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr11:85344800-85350400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr11:85345000-85350400	Strong transcription	Primary T cells from cord blood	blood
26	chr11:85345200-85350200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:85345800-85358000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr11:85346000-85350200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr11:85346000-85350600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr11:85346000-85350800	Weak transcription	Brain Germinal Matrix	brain
31	chr11:85346000-85354400	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr11:85346000-85358000	Weak transcription	HMEC	breast
33	chr11:85346000-85358200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr11:85346000-85358200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr11:85346000-85358200	Weak transcription	Brain Angular Gyrus	brain
36	chr11:85346000-85358200	Weak transcription	Brain Substantia Nigra	brain
37	chr11:85346000-85358200	Weak transcription	Fetal Lung	lung
38	chr11:85346000-85358200	Weak transcription	NHEK	skin
39	chr11:85346400-85350600	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr11:85346400-85352600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr11:85346400-85354200	Weak transcription	Hela-S3	cervix
42	chr11:85346400-85358000	Weak transcription	HepG2	liver
43	chr11:85346400-85358200	Weak transcription	Lung	lung
44	chr11:85346600-85358200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr11:85346800-85358000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr11:85346800-85358200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr11:85347200-85350800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr11:85347200-85357800	Weak transcription	GM12878-XiMat	blood
49	chr11:85347200-85358200	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr11:85347400-85350600	Weak transcription	Osteobl	bone

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