Variant report

Variant	rs61180955
Chromosome Location	chr11:85309531-85309532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10501593	0.85[AMR][1000 genomes]
rs12099145	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17148234	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17148242	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17148255	0.83[AMR][1000 genomes]
rs17148285	1.00[AMR][1000 genomes]
rs56047795	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56687664	0.85[AMR][1000 genomes]
rs56838978	0.85[AMR][1000 genomes]
rs57309067	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57313830	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs57361884	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60192818	0.85[AMR][1000 genomes]
rs60734322	0.85[AMR][1000 genomes]
rs60865542	0.85[AMR][1000 genomes]
rs61169921	1.00[AMR][1000 genomes]
rs61198962	0.85[AMR][1000 genomes]
rs61465434	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6592254	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6592256	0.85[AMR][1000 genomes]
rs6592257	0.85[AMR][1000 genomes]
rs7103387	0.83[AMR][1000 genomes]
rs7116532	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7116553	1.00[AMR][1000 genomes]
rs7122987	0.85[AMR][1000 genomes]
rs744173	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7938991	0.85[AMR][1000 genomes]
rs7942218	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7949114	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7952219	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv898047	chr11:85180409-85377707	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
6	nsv898048	chr11:85206156-85404138	Flanking Active TSS Genic enhancers Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85300400-85310200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr11:85304800-85310600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:85309200-85309800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr11:85309200-85310200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links