Variant report

Variant	rs17150054
Chromosome Location	chr8:9306547-9306548
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr8:9306042-9306554	MCF-7	breast:	n/a	chr8:9306316-9306329 chr8:9306317-9306328 chr8:9306316-9306329
2	FOXA1	chr8:9306072-9306577	A549	lung:	n/a	n/a
3	GATA3	chr8:9306053-9306549	MCF-7	breast:	n/a	chr8:9306189-9306198
4	SP1	chr8:9305908-9306659	A549	lung:	n/a	n/a
5	NR3C1	chr8:9305973-9306592	A549	lung:	n/a	chr8:9306385-9306402 chr8:9306381-9306407 chr8:9306381-9306407 chr8:9306381-9306407 chr8:9306385-9306403 chr8:9306190-9306199 chr8:9306387-9306401 chr8:9306381-9306407 chr8:9306386-9306402 chr8:9306387-9306401 chr8:9306381-9306407
6	GATA3	chr8:9305811-9306777	A549	lung:	n/a	chr8:9306189-9306198 chr8:9306566-9306576
7	FOS	chr8:9305545-9306606	MCF10A-Er-Src	breast:	n/a	chr8:9306190-9306200 chr8:9306567-9306576 chr8:9306187-9306198 chr8:9306190-9306200 chr8:9306190-9306200 chr8:9306191-9306199
8	NR3C1	chr8:9306071-9306602	A549	lung:	n/a	chr8:9306385-9306402 chr8:9306381-9306407 chr8:9306381-9306407 chr8:9306381-9306407 chr8:9306385-9306403 chr8:9306190-9306199 chr8:9306387-9306401 chr8:9306381-9306407 chr8:9306386-9306402 chr8:9306387-9306401 chr8:9306381-9306407
9	SP1	chr8:9305867-9306610	A549	lung:	n/a	n/a
10	GATA3	chr8:9305961-9306583	A549	lung:	n/a	chr8:9306189-9306198 chr8:9306566-9306576
11	MYC	chr8:9306079-9306554	MCF10A-Er-Src	breast:	n/a	n/a
12	SIN3AK20	chr8:9306060-9306592	MCF-7	breast:	n/a	n/a
13	CEBPB	chr8:9305902-9306656	A549	lung:	n/a	chr8:9306316-9306329 chr8:9306317-9306328 chr8:9306004-9306016 chr8:9306316-9306329
14	CEBPB	chr8:9306110-9306583	A549	lung:	n/a	chr8:9306316-9306329 chr8:9306317-9306328 chr8:9306316-9306329
15	NR3C1	chr8:9306065-9306613	A549	lung:	n/a	chr8:9306385-9306402 chr8:9306381-9306407 chr8:9306381-9306407 chr8:9306381-9306407 chr8:9306385-9306403 chr8:9306190-9306199 chr8:9306387-9306401 chr8:9306381-9306407 chr8:9306386-9306402 chr8:9306387-9306401 chr8:9306381-9306407
16	FOSL2	chr8:9305732-9306666	A549	lung:	n/a	chr8:9306190-9306200 chr8:9306567-9306576 chr8:9306187-9306198 chr8:9306190-9306200 chr8:9306190-9306200 chr8:9306191-9306199
17	NR3C1	chr8:9306102-9306616	A549	lung:	n/a	chr8:9306385-9306402 chr8:9306381-9306407 chr8:9306381-9306407 chr8:9306381-9306407 chr8:9306385-9306403 chr8:9306190-9306199 chr8:9306387-9306401 chr8:9306381-9306407 chr8:9306386-9306402 chr8:9306387-9306401 chr8:9306381-9306407
18	FOS	chr8:9305836-9306571	MCF10A-Er-Src	breast:	n/a	chr8:9306190-9306200 chr8:9306187-9306198 chr8:9306190-9306200 chr8:9306190-9306200 chr8:9306191-9306199
19	KAP1	chr8:9305962-9306547	U2OS	brain:	n/a	n/a
20	TCF12	chr8:9305933-9306663	A549	lung:	n/a	chr8:9306433-9306441 chr8:9306276-9306285

Variant related genes	Relation type
ENSG00000249050	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10503383	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12676093	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12680337	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12680899	1.00[EUR][1000 genomes]
rs17149984	1.00[AFR][1000 genomes]
rs17149988	1.00[CEU][hapmap]
rs17150030	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17150035	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17150068	1.00[EUR][1000 genomes]
rs17150074	1.00[EUR][1000 genomes]
rs7464733	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917117	chr8:8621658-9313799	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv817373	chr8:8857854-9361049	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv949434	chr8:8993551-9318404	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	nsv497927	chr8:9097611-9544519	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv1030524	chr8:9183482-9412833	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	esv2764086	chr8:9216584-9334601	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1026506	chr8:9258997-9338042	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1027325	chr8:9264405-9333207	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9305000-9308400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:9305600-9306600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr8:9305600-9306600	Flanking Active TSS	A549	lung
4	chr8:9305600-9306600	Enhancers	Osteobl	bone
5	chr8:9305600-9306800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:9305600-9306800	Enhancers	Hela-S3	cervix
7	chr8:9305600-9306800	Enhancers	HSMM	muscle
8	chr8:9305600-9307000	Enhancers	Fetal Intestine Small	intestine
9	chr8:9305800-9306600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr8:9305800-9306600	Enhancers	HMEC	breast
11	chr8:9305800-9306800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:9305800-9308000	Enhancers	HepG2	liver
13	chr8:9306000-9307000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:9306000-9307000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links