Variant report

Variant	rs17151656
Chromosome Location	chr7:25496143-25496144
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10227290	0.86[ASN][1000 genomes]
rs10266599	0.86[ASN][1000 genomes]
rs10266720	0.86[ASN][1000 genomes]
rs10270802	0.86[ASN][1000 genomes]
rs10271456	0.86[ASN][1000 genomes]
rs16873862	0.87[ASN][1000 genomes]
rs17251882	0.81[EUR][1000 genomes]
rs17317200	0.87[EUR][1000 genomes]
rs2079495	0.86[ASN][1000 genomes]
rs2391133	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3857726	0.86[ASN][1000 genomes]
rs3857727	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3913611	0.84[EUR][1000 genomes]
rs4722468	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722469	0.83[AFR][1000 genomes]
rs55938803	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62452226	0.86[ASN][1000 genomes]
rs62452227	0.86[ASN][1000 genomes]
rs62452229	0.86[ASN][1000 genomes]
rs6958937	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7782450	0.87[ASN][1000 genomes]
rs7802027	0.91[EUR][1000 genomes]
rs9969299	0.86[ASN][1000 genomes]
rs9969303	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606426	chr7:25254125-25621579	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
4	nsv1033664	chr7:25471881-25503391	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1033757	chr7:25472222-25504421	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17151656	TOMM7	cis	parietal	SCAN

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25493400-25497000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:25493400-25497000	Enhancers	Fetal Lung	lung
3	chr7:25493600-25497000	Enhancers	Adipose Nuclei	Adipose
4	chr7:25494200-25496800	Enhancers	Lung	lung
5	chr7:25494200-25497000	Enhancers	Colon Smooth Muscle	Colon
6	chr7:25494400-25497200	Enhancers	Ovary	ovary
7	chr7:25494600-25496800	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr7:25494800-25496400	Enhancers	Spleen	Spleen
9	chr7:25495000-25496200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:25495000-25496200	Weak transcription	Fetal Muscle Leg	muscle
11	chr7:25495000-25496200	Weak transcription	Psoas Muscle	Psoas
12	chr7:25495000-25497000	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr7:25495200-25496200	Weak transcription	Fetal Stomach	stomach
14	chr7:25495200-25496800	Enhancers	Small Intestine	intestine
15	chr7:25495400-25496600	Enhancers	Aorta	Aorta
16	chr7:25495400-25496800	Enhancers	Right Atrium	heart
17	chr7:25495400-25497200	Enhancers	Brain Anterior Caudate	brain
18	chr7:25495600-25496800	Enhancers	Esophagus	oesophagus
19	chr7:25495600-25496800	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr7:25495800-25496600	Weak transcription	Placenta	Placenta
21	chr7:25496000-25496200	Enhancers	Fetal Kidney	kidney
22	chr7:25496000-25496200	Enhancers	Stomach Smooth Muscle	stomach
23	chr7:25496000-25496800	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr7:25496000-25496800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr7:25496000-25496800	Bivalent Enhancer	Fetal Intestine Small	intestine
26	chr7:25496000-25496800	Enhancers	Pancreas	Pancrea
27	chr7:25496000-25497000	Enhancers	Liver	Liver

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