Variant report

Variant	rs17317200
Chromosome Location	chr7:25496574-25496575
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11539443	1.00[ASN][1000 genomes]
rs17151656	0.87[EUR][1000 genomes]
rs17151702	1.00[ASN][1000 genomes]
rs17251882	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17367591	1.00[ASN][1000 genomes]
rs17367682	1.00[ASN][1000 genomes]
rs17464623	1.00[ASN][1000 genomes]
rs17727166	1.00[ASN][1000 genomes]
rs2391133	0.88[EUR][1000 genomes]
rs3857727	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3913611	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4722468	0.88[EUR][1000 genomes]
rs55803172	1.00[ASN][1000 genomes]
rs55938803	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56175323	1.00[ASN][1000 genomes]
rs56234882	1.00[ASN][1000 genomes]
rs56241258	1.00[ASN][1000 genomes]
rs56401538	1.00[ASN][1000 genomes]
rs6958937	0.86[EUR][1000 genomes]
rs73084000	1.00[ASN][1000 genomes]
rs73085945	1.00[ASN][1000 genomes]
rs73085983	1.00[ASN][1000 genomes]
rs73085990	1.00[ASN][1000 genomes]
rs73085991	1.00[ASN][1000 genomes]
rs7802027	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606426	chr7:25254125-25621579	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
4	nsv1033664	chr7:25471881-25503391	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1033757	chr7:25472222-25504421	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25493400-25497000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:25493400-25497000	Enhancers	Fetal Lung	lung
3	chr7:25493600-25497000	Enhancers	Adipose Nuclei	Adipose
4	chr7:25494200-25496800	Enhancers	Lung	lung
5	chr7:25494200-25497000	Enhancers	Colon Smooth Muscle	Colon
6	chr7:25494400-25497200	Enhancers	Ovary	ovary
7	chr7:25494600-25496800	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr7:25495000-25497000	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr7:25495200-25496800	Enhancers	Small Intestine	intestine
10	chr7:25495400-25496600	Enhancers	Aorta	Aorta
11	chr7:25495400-25496800	Enhancers	Right Atrium	heart
12	chr7:25495400-25497200	Enhancers	Brain Anterior Caudate	brain
13	chr7:25495600-25496800	Enhancers	Esophagus	oesophagus
14	chr7:25495600-25496800	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr7:25495800-25496600	Weak transcription	Placenta	Placenta
16	chr7:25496000-25496800	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr7:25496000-25496800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr7:25496000-25496800	Bivalent Enhancer	Fetal Intestine Small	intestine
19	chr7:25496000-25496800	Enhancers	Pancreas	Pancrea
20	chr7:25496000-25497000	Enhancers	Liver	Liver
21	chr7:25496200-25496600	Enhancers	Fetal Stomach	stomach
22	chr7:25496200-25496600	Enhancers	Stomach Mucosa	stomach
23	chr7:25496200-25496800	Enhancers	Fetal Muscle Leg	muscle
24	chr7:25496200-25496800	Enhancers	Psoas Muscle	Psoas
25	chr7:25496200-25497000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr7:25496200-25497000	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr7:25496200-25497000	Enhancers	Rectal Smooth Muscle	rectum
28	chr7:25496400-25496600	Enhancers	Stomach Smooth Muscle	stomach
29	chr7:25496400-25497000	Enhancers	Brain Germinal Matrix	brain
30	chr7:25496400-25497200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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