Variant report

Variant	rs17367591
Chromosome Location	chr7:25656864-25656865
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11539443	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151702	1.00[ASN][1000 genomes]
rs17251882	1.00[ASN][1000 genomes]
rs17317200	1.00[ASN][1000 genomes]
rs17367682	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17464623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17727166	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17783371	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs3857727	1.00[ASN][1000 genomes]
rs55803172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55938803	1.00[ASN][1000 genomes]
rs56175323	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56234882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56241258	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56401538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73084000	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73085945	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73085983	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73085990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73085991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7802027	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv1020230	chr7:25649344-25783071	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	esv2753233	chr7:25655060-25771160	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25653000-25657200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr7:25653200-25657600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:25653200-25657600	Enhancers	Primary T cells from cord blood	blood
4	chr7:25653400-25659600	Enhancers	Primary B cells from peripheral blood	blood
5	chr7:25653600-25657400	Enhancers	Primary hematopoietic stem cells	blood
6	chr7:25653600-25657600	Enhancers	Adipose Nuclei	Adipose
7	chr7:25654400-25657200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr7:25655200-25657200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr7:25655200-25657400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr7:25655200-25659600	Weak transcription	Fetal Stomach	stomach
11	chr7:25655200-25660000	Weak transcription	Placenta	Placenta
12	chr7:25655200-25664800	Weak transcription	Fetal Kidney	kidney
13	chr7:25655400-25657000	Weak transcription	Fetal Lung	lung
14	chr7:25655600-25657200	Weak transcription	Lung	lung
15	chr7:25655600-25657400	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr7:25655600-25657800	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr7:25655600-25659600	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr7:25655600-25660000	Weak transcription	Aorta	Aorta
19	chr7:25655600-25664200	Weak transcription	Right Atrium	heart
20	chr7:25655800-25657200	Weak transcription	Brain Hippocampus Middle	brain
21	chr7:25655800-25659600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr7:25655800-25659600	Weak transcription	Fetal Thymus	thymus
23	chr7:25655800-25659800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr7:25655800-25660200	Weak transcription	Spleen	Spleen
25	chr7:25655800-25660400	Weak transcription	Left Ventricle	heart
26	chr7:25656000-25657000	Weak transcription	Thymus	Thymus
27	chr7:25656000-25659200	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr7:25656200-25657000	Weak transcription	Fetal Heart	heart
29	chr7:25656200-25658400	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr7:25656200-25659000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr7:25656400-25657400	Enhancers	Psoas Muscle	Psoas
32	chr7:25656400-25657400	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr7:25656600-25657000	Enhancers	Primary B cells from cord blood	blood
34	chr7:25656600-25657000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr7:25656600-25658600	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr7:25656600-25659600	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr7:25656600-25664200	Weak transcription	Fetal Muscle Leg	muscle
38	chr7:25656800-25657000	Enhancers	Colon Smooth Muscle	Colon
39	chr7:25656800-25657400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr7:25656800-25657400	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr7:25656800-25657400	Enhancers	Skeletal Muscle Female	skeletal muscle

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