Variant report

Variant	rs73085983
Chromosome Location	chr7:25642657-25642658
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11539443	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151702	1.00[ASN][1000 genomes]
rs17251882	1.00[ASN][1000 genomes]
rs17317200	1.00[ASN][1000 genomes]
rs17367591	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17367682	1.00[ASN][1000 genomes]
rs17464623	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17727166	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17783371	0.91[AMR][1000 genomes]
rs3857727	1.00[ASN][1000 genomes]
rs55803172	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55938803	1.00[ASN][1000 genomes]
rs56175323	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56234882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56241258	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56401538	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73084000	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73085920	0.86[EUR][1000 genomes]
rs73085945	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73085990	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73085991	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7802027	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	esv2753823	chr7:25626156-25655093	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25637400-25642800	Weak transcription	Aorta	Aorta
2	chr7:25638800-25642800	Weak transcription	Psoas Muscle	Psoas
3	chr7:25642200-25642800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:25642200-25643200	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr7:25642200-25643200	Active TSS	Duodenum Mucosa	Duodenum
6	chr7:25642200-25643200	Active TSS	HMEC	breast
7	chr7:25642400-25642800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:25642400-25642800	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr7:25642400-25643000	Active TSS	Liver	Liver
10	chr7:25642400-25643000	Active TSS	Stomach Smooth Muscle	stomach
11	chr7:25642400-25643200	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr7:25642400-25643200	Active TSS	H1 Cell Line	embryonic stem cell
13	chr7:25642400-25643200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr7:25642400-25643200	Active TSS	HUES6 Cell Line	embryonic stem cell
15	chr7:25642400-25643200	Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr7:25642400-25643200	Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr7:25642400-25643200	Active TSS	Primary T cells from cord blood	blood
18	chr7:25642400-25643200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr7:25642400-25643200	Active TSS	Rectal Mucosa Donor 29	rectum
20	chr7:25642600-25643000	Active TSS	Primary T helper cells PMA-I stimulated	--
21	chr7:25642600-25643000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:25642600-25643000	Active TSS	Duodenum Smooth Muscle	Duodenum
23	chr7:25642600-25643000	Active TSS	Fetal Brain Female	brain
24	chr7:25642600-25643200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
25	chr7:25642600-25643200	Active TSS	H9 Cell Line	embryonic stem cell
26	chr7:25642600-25643200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:25642600-25643200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr7:25642600-25643200	Active TSS	HUES64 Cell Line	embryonic stem cell
29	chr7:25642600-25643200	Active TSS	iPS-18 Cell Line	embryonic stem cell
30	chr7:25642600-25643200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr7:25642600-25643200	Active TSS	Breast Myoepithelial Primary Cells	Breast
32	chr7:25642600-25643200	Active TSS	Primary hematopoietic stem cells	blood
33	chr7:25642600-25643200	Active TSS	Primary hematopoietic stem cells short term culture	blood
34	chr7:25642600-25643200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
35	chr7:25642600-25643200	Active TSS	Primary T helper cells fromperipheralblood	blood
36	chr7:25642600-25643200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr7:25642600-25643200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
38	chr7:25642600-25643200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr7:25642600-25643200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr7:25642600-25643200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr7:25642600-25643200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr7:25642600-25643200	Active TSS	Brain Germinal Matrix	brain
43	chr7:25642600-25643200	Active TSS	Fetal Intestine Large	intestine
44	chr7:25642600-25643200	Active TSS	Fetal Intestine Small	intestine
45	chr7:25642600-25643200	Active TSS	Fetal Stomach	stomach
46	chr7:25642600-25643200	Active TSS	Ovary	ovary
47	chr7:25642600-25643200	Active TSS	Pancreas	Pancrea
48	chr7:25642600-25643200	Active TSS	Rectal Mucosa Donor 31	rectum
49	chr7:25642600-25643200	Active TSS	Right Atrium	heart
50	chr7:25642600-25643200	Active TSS	Skeletal Muscle Male	skeletal muscle

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