Variant report

Variant	rs17783371
Chromosome Location	chr7:25601128-25601129
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1393674	0.82[AMR][1000 genomes]
rs17319383	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17367591	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs17367682	1.00[AFR][1000 genomes]
rs17464623	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17465340	1.00[ASN][1000 genomes]
rs17465417	1.00[ASN][1000 genomes]
rs17725870	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17726931	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17727166	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs4719815	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4722478	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4722482	1.00[ASN][1000 genomes]
rs55803172	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs55903760	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56027922	1.00[ASN][1000 genomes]
rs56077052	1.00[ASN][1000 genomes]
rs56151685	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56161015	1.00[ASN][1000 genomes]
rs56175323	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56234882	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs56241258	0.91[AMR][1000 genomes]
rs56345330	1.00[ASN][1000 genomes]
rs56401538	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs58142628	0.82[AMR][1000 genomes]
rs73083920	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73083948	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73083949	1.00[ASN][1000 genomes]
rs73083979	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73083983	1.00[ASN][1000 genomes]
rs73084000	0.86[EUR][1000 genomes]
rs73085945	0.80[EUR][1000 genomes]
rs73085983	0.91[AMR][1000 genomes]
rs73085990	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73085991	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606426	chr7:25254125-25621579	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
4	nsv522815	chr7:25599858-25606120	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25594000-25601800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr7:25596200-25601600	Weak transcription	Fetal Brain Female	brain
3	chr7:25598600-25604400	Weak transcription	Fetal Kidney	kidney
4	chr7:25599400-25602800	Enhancers	Fetal Muscle Leg	muscle
5	chr7:25599800-25603800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:25600200-25603000	Enhancers	Fetal Lung	lung
7	chr7:25600400-25603000	Enhancers	Fetal Stomach	stomach
8	chr7:25600600-25601800	Weak transcription	Spleen	Spleen
9	chr7:25600600-25602400	Enhancers	Stomach Smooth Muscle	stomach
10	chr7:25600600-25603000	Enhancers	Colon Smooth Muscle	Colon
11	chr7:25600800-25601600	Enhancers	Lung	lung
12	chr7:25600800-25602800	Enhancers	Rectal Smooth Muscle	rectum
13	chr7:25600800-25603000	Enhancers	Fetal Muscle Trunk	muscle
14	chr7:25600800-25605200	Enhancers	Brain Germinal Matrix	brain

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