Variant report

Variant	rs17465340
Chromosome Location	chr7:25728623-25728624
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17319383	1.00[ASN][1000 genomes]
rs17465417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17725870	1.00[ASN][1000 genomes]
rs17726931	1.00[ASN][1000 genomes]
rs17783371	1.00[ASN][1000 genomes]
rs4719815	1.00[ASN][1000 genomes]
rs4722478	1.00[ASN][1000 genomes]
rs4722482	1.00[ASN][1000 genomes]
rs55903760	1.00[ASN][1000 genomes]
rs56027922	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56077052	1.00[ASN][1000 genomes]
rs56151685	1.00[ASN][1000 genomes]
rs56161015	1.00[ASN][1000 genomes]
rs56345330	1.00[ASN][1000 genomes]
rs73083920	1.00[ASN][1000 genomes]
rs73083948	1.00[ASN][1000 genomes]
rs73083949	1.00[ASN][1000 genomes]
rs73083979	1.00[ASN][1000 genomes]
rs73083983	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv1020230	chr7:25649344-25783071	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	esv2753233	chr7:25655060-25771160	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25725400-25731000	Enhancers	Adipose Nuclei	Adipose
2	chr7:25726400-25729400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr7:25726600-25729400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr7:25726600-25729400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr7:25726600-25730600	Weak transcription	Right Atrium	heart
6	chr7:25726800-25734800	Weak transcription	Psoas Muscle	Psoas
7	chr7:25727200-25734400	Weak transcription	Fetal Lung	lung
8	chr7:25727200-25735000	Weak transcription	Fetal Muscle Leg	muscle
9	chr7:25728000-25728800	Enhancers	Fetal Kidney	kidney
10	chr7:25728200-25729200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr7:25728400-25734200	Weak transcription	Fetal Stomach	stomach
12	chr7:25728600-25729000	Enhancers	Ovary	ovary
13	chr7:25728600-25729600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr7:25728600-25729800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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