Variant report

Variant	rs56027922
Chromosome Location	chr7:25753861-25753862
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:25746547..25750051-chr7:25750386..25754973,6	K562	blood:
2	chr7:25746547..25750029-chr7:25750386..25754973,4	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17319383	1.00[ASN][1000 genomes]
rs17465340	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17465417	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17725870	1.00[ASN][1000 genomes]
rs17726931	1.00[ASN][1000 genomes]
rs17783371	1.00[ASN][1000 genomes]
rs4719815	1.00[ASN][1000 genomes]
rs4722478	1.00[ASN][1000 genomes]
rs4722482	1.00[ASN][1000 genomes]
rs55903760	1.00[ASN][1000 genomes]
rs56077052	1.00[ASN][1000 genomes]
rs56151685	1.00[ASN][1000 genomes]
rs56161015	1.00[ASN][1000 genomes]
rs56345330	1.00[ASN][1000 genomes]
rs73083920	1.00[ASN][1000 genomes]
rs73083948	1.00[ASN][1000 genomes]
rs73083949	1.00[ASN][1000 genomes]
rs73083979	1.00[ASN][1000 genomes]
rs73083983	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv1020230	chr7:25649344-25783071	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	esv2753233	chr7:25655060-25771160	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25746200-25765400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:25748200-25757200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:25748200-25765800	Weak transcription	Fetal Stomach	stomach
4	chr7:25749000-25757400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:25750400-25754400	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr7:25750600-25754200	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr7:25750600-25760000	Weak transcription	Brain Hippocampus Middle	brain
8	chr7:25750800-25754000	Enhancers	Brain Anterior Caudate	brain
9	chr7:25751000-25754400	Enhancers	Colon Smooth Muscle	Colon
10	chr7:25751000-25755800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:25751000-25757000	Weak transcription	Ovary	ovary
12	chr7:25752200-25754200	Enhancers	Stomach Smooth Muscle	stomach
13	chr7:25752400-25754000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr7:25752600-25754600	Weak transcription	Fetal Lung	lung
15	chr7:25752600-25756000	Weak transcription	Fetal Muscle Leg	muscle
16	chr7:25752600-25760800	Weak transcription	Brain Angular Gyrus	brain
17	chr7:25752600-25765000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr7:25752800-25754000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr7:25753600-25754800	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr7:25753800-25754200	Enhancers	Aorta	Aorta
21	chr7:25753800-25754200	Enhancers	Right Atrium	heart
22	chr7:25753800-25755000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr7:25753800-25755800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr7:25753800-25756200	Enhancers	Psoas Muscle	Psoas

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