Variant report

Variant	rs17367682
Chromosome Location	chr7:25669207-25669208
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11539443	1.00[ASN][1000 genomes]
rs17151702	1.00[ASN][1000 genomes]
rs17251882	1.00[ASN][1000 genomes]
rs17317200	1.00[ASN][1000 genomes]
rs17367591	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17464623	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17727166	1.00[ASN][1000 genomes]
rs17783371	1.00[AFR][1000 genomes]
rs3857727	1.00[ASN][1000 genomes]
rs55803172	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs55938803	1.00[ASN][1000 genomes]
rs56175323	1.00[ASN][1000 genomes]
rs56234882	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56241258	1.00[ASN][1000 genomes]
rs56401538	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73084000	1.00[ASN][1000 genomes]
rs73085945	1.00[ASN][1000 genomes]
rs73085983	1.00[ASN][1000 genomes]
rs73085990	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73085991	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7802027	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv1020230	chr7:25649344-25783071	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	esv2753233	chr7:25655060-25771160	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25664800-25669400	Enhancers	Brain Germinal Matrix	brain
2	chr7:25665400-25672800	Weak transcription	Aorta	Aorta
3	chr7:25665600-25670600	Weak transcription	Right Atrium	heart
4	chr7:25666400-25675600	Weak transcription	Ovary	ovary
5	chr7:25666800-25675600	Weak transcription	Fetal Muscle Leg	muscle
6	chr7:25667600-25669400	Weak transcription	Fetal Stomach	stomach
7	chr7:25668000-25671400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:25668800-25670000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr7:25668800-25672000	Weak transcription	Fetal Lung	lung
10	chr7:25669200-25670400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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