Variant report

Variant	rs17152148
Chromosome Location	chr7:105442411-105442412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:105434847..105438476-chr7:105439556..105442590,4	K562	blood:
2	chr7:105438802..105440632-chr7:105441148..105443801,2	MCF-7	breast:
3	chr7:105440893..105443380-chr7:105445817..105448313,3	K562	blood:
4	chr7:105441499..105444836-chr7:105445726..105447948,4	K562	blood:
5	chr7:105408610..105410382-chr7:105440974..105443928,2	MCF-7	breast:
6	chr7:105441425..105445126-chr7:105448801..105451715,4	K562	blood:
7	chr7:105440792..105442461-chr7:105443964..105445643,2	K562	blood:
8	chr7:105427683..105429213-chr7:105441124..105443053,2	K562	blood:

No data

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1209199	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs13227391	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13229009	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13231470	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1981603	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2010406	0.93[CHB][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs2010419	1.00[CHB][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs35022646	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4730107	0.91[ASN][1000 genomes]
rs71564737	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs917274	0.93[CHB][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027213	chr7:105438610-106022869	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105414800-105443600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr7:105418400-105446400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:105422000-105452000	Weak transcription	Colonic Mucosa	Colon
4	chr7:105429200-105446000	Weak transcription	Brain Anterior Caudate	brain
5	chr7:105430000-105447000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr7:105430200-105479200	Weak transcription	Aorta	Aorta
7	chr7:105433000-105444200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr7:105434200-105446000	Weak transcription	Brain Angular Gyrus	brain
9	chr7:105435800-105445400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:105435800-105446600	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr7:105435800-105447200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr7:105436200-105446600	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr7:105436800-105447200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr7:105437600-105445800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr7:105438000-105446400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr7:105438400-105443600	Weak transcription	Small Intestine	intestine
17	chr7:105439000-105442800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr7:105439000-105443400	Weak transcription	Fetal Intestine Large	intestine
19	chr7:105439000-105443600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr7:105439000-105443600	Weak transcription	Gastric	stomach
21	chr7:105439000-105445400	Weak transcription	Pancreas	Pancrea
22	chr7:105439000-105446800	Weak transcription	Spleen	Spleen
23	chr7:105439600-105443200	Weak transcription	Stomach Mucosa	stomach
24	chr7:105439600-105444200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr7:105439800-105443800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr7:105439800-105445200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr7:105439800-105447600	Enhancers	Colon Smooth Muscle	Colon
28	chr7:105440000-105442600	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr7:105440000-105446000	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr7:105440200-105442800	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr7:105440200-105442800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr7:105440200-105444600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr7:105440200-105445800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr7:105440200-105446000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr7:105440200-105446000	Weak transcription	Lung	lung
36	chr7:105440400-105442600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr7:105440400-105442600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr7:105440400-105445600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr7:105440400-105446200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr7:105440600-105442600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr7:105440800-105442600	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr7:105440800-105443000	Weak transcription	Fetal Intestine Small	intestine
43	chr7:105441000-105443200	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr7:105441000-105443600	Weak transcription	Esophagus	oesophagus
45	chr7:105441000-105445600	Weak transcription	Right Atrium	heart
46	chr7:105441000-105446000	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr7:105441000-105447000	Weak transcription	Right Ventricle	heart
48	chr7:105441000-105448200	Weak transcription	Left Ventricle	heart
49	chr7:105441200-105442600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr7:105441200-105442800	Weak transcription	Rectal Smooth Muscle	rectum

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