Variant report

Variant	rs917274
Chromosome Location	chr7:105439187-105439188
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:105438530..105440679-chr7:105443044..105444948,2	K562	blood:
2	chr7:105438596..105441130-chr7:105444567..105447307,2	MCF-7	breast:
3	chr7:105438802..105440632-chr7:105441148..105443801,2	MCF-7	breast:
4	chr7:105433793..105435383-chr7:105437753..105439269,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1209199	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs13227391	1.00[CHB][hapmap];0.96[CHD][hapmap];0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs13229009	1.00[CHB][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs13231470	0.93[CHB][hapmap];0.96[CHD][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs17152148	0.93[CHB][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs1981603	0.90[ASN][1000 genomes]
rs2010406	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2010419	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35022646	0.90[ASN][1000 genomes]
rs4730107	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71564737	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027213	chr7:105438610-106022869	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105414800-105443600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr7:105417200-105441800	Weak transcription	HepG2	liver
3	chr7:105417400-105439200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:105418200-105440600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr7:105418400-105439200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:105418400-105446400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr7:105420800-105439600	Weak transcription	Psoas Muscle	Psoas
8	chr7:105422000-105452000	Weak transcription	Colonic Mucosa	Colon
9	chr7:105423200-105440400	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr7:105426400-105440800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr7:105428200-105440200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:105429000-105440600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr7:105429200-105446000	Weak transcription	Brain Anterior Caudate	brain
14	chr7:105429600-105439400	Weak transcription	Primary T cells from cord blood	blood
15	chr7:105429600-105440200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr7:105430000-105447000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr7:105430200-105479200	Weak transcription	Aorta	Aorta
18	chr7:105432000-105440200	Weak transcription	Fetal Thymus	thymus
19	chr7:105432600-105440200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr7:105433000-105444200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr7:105433200-105439400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr7:105433800-105440400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr7:105434200-105440200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr7:105434200-105446000	Weak transcription	Brain Angular Gyrus	brain
25	chr7:105435000-105439200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr7:105435800-105445400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr7:105435800-105446600	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr7:105435800-105447200	Weak transcription	Primary hematopoietic stem cells	blood
29	chr7:105436200-105439800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr7:105436200-105439800	Weak transcription	Right Ventricle	heart
31	chr7:105436200-105439800	Enhancers	Stomach Smooth Muscle	stomach
32	chr7:105436200-105440000	Weak transcription	Fetal Heart	heart
33	chr7:105436200-105440000	Weak transcription	Right Atrium	heart
34	chr7:105436200-105440000	Weak transcription	NH-A	brain
35	chr7:105436200-105440200	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr7:105436200-105446600	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr7:105436400-105439400	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr7:105436400-105440800	Weak transcription	Fetal Lung	lung
39	chr7:105436600-105440400	Weak transcription	HSMM	muscle
40	chr7:105436800-105440000	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr7:105436800-105447200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr7:105437000-105440200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr7:105437200-105439800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr7:105437200-105440800	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr7:105437400-105439600	Weak transcription	HSMMtube	muscle
46	chr7:105437400-105439800	Weak transcription	Osteobl	bone
47	chr7:105437400-105440800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr7:105437400-105442200	Weak transcription	Liver	Liver
49	chr7:105437600-105440000	Enhancers	H1 Cell Line	embryonic stem cell
50	chr7:105437600-105440800	Enhancers	HUES6 Cell Line	embryonic stem cell

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