Variant report

Variant	rs35022646
Chromosome Location	chr7:105440733-105440734
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:105434847..105438476-chr7:105439556..105442590,4	K562	blood:
2	chr7:105436100..105438476-chr7:105440003..105442392,2	K562	blood:
3	chr7:105438596..105441130-chr7:105444567..105447307,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13227391	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13229009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13231470	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17152148	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1981603	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2010406	0.90[ASN][1000 genomes]
rs2010419	0.90[ASN][1000 genomes]
rs4730107	0.92[ASN][1000 genomes]
rs71564737	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs917274	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027213	chr7:105438610-106022869	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105414800-105443600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr7:105417200-105441800	Weak transcription	HepG2	liver
3	chr7:105418400-105446400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:105422000-105452000	Weak transcription	Colonic Mucosa	Colon
5	chr7:105426400-105440800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:105429200-105446000	Weak transcription	Brain Anterior Caudate	brain
7	chr7:105430000-105447000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr7:105430200-105479200	Weak transcription	Aorta	Aorta
9	chr7:105433000-105444200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr7:105434200-105446000	Weak transcription	Brain Angular Gyrus	brain
11	chr7:105435800-105445400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:105435800-105446600	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr7:105435800-105447200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr7:105436200-105446600	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr7:105436400-105440800	Weak transcription	Fetal Lung	lung
16	chr7:105436800-105447200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr7:105437200-105440800	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr7:105437400-105440800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr7:105437400-105442200	Weak transcription	Liver	Liver
20	chr7:105437600-105440800	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr7:105437600-105441200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr7:105437600-105445800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr7:105438000-105446400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr7:105438400-105441200	Enhancers	Fetal Muscle Leg	muscle
25	chr7:105438400-105443600	Weak transcription	Small Intestine	intestine
26	chr7:105438800-105440800	Strong transcription	Fetal Intestine Small	intestine
27	chr7:105439000-105442800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr7:105439000-105443400	Weak transcription	Fetal Intestine Large	intestine
29	chr7:105439000-105443600	Weak transcription	Duodenum Mucosa	Duodenum
30	chr7:105439000-105443600	Weak transcription	Gastric	stomach
31	chr7:105439000-105445400	Weak transcription	Pancreas	Pancrea
32	chr7:105439000-105446800	Weak transcription	Spleen	Spleen
33	chr7:105439200-105440800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr7:105439200-105441000	Enhancers	Left Ventricle	heart
35	chr7:105439400-105441800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
36	chr7:105439600-105441000	Enhancers	Psoas Muscle	Psoas
37	chr7:105439600-105441400	Enhancers	HSMMtube	muscle
38	chr7:105439600-105443200	Weak transcription	Stomach Mucosa	stomach
39	chr7:105439600-105444200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr7:105439800-105441000	Enhancers	Right Ventricle	heart
41	chr7:105439800-105441200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr7:105439800-105441200	Enhancers	Primary B cells from peripheral blood	blood
43	chr7:105439800-105441200	Enhancers	Rectal Smooth Muscle	rectum
44	chr7:105439800-105441400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr7:105439800-105441600	Enhancers	Osteobl	bone
46	chr7:105439800-105443800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr7:105439800-105445200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr7:105439800-105447600	Enhancers	Colon Smooth Muscle	Colon
49	chr7:105440000-105441000	Enhancers	Right Atrium	heart
50	chr7:105440000-105441200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links