Variant report

Variant	rs17152785
Chromosome Location	chr8:10891959-10891960
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10096326	1.00[GIH][hapmap]
rs10100449	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10102241	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10110123	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11250111	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11996027	1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11998417	1.00[JPT][hapmap]
rs12335200	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17152791	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17152793	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MKK][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17152795	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17155406	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2001433	1.00[JPT][hapmap]
rs35539607	0.90[ASN][1000 genomes]
rs36088662	0.90[ASN][1000 genomes]
rs4141827	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4841486	1.00[CHD][hapmap]
rs56665484	0.90[ASN][1000 genomes]
rs59008721	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60039934	0.82[ASN][1000 genomes]
rs60514110	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60680986	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61027371	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6601548	1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6601549	1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6601550	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6983680	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7000431	1.00[JPT][hapmap]
rs7015045	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs73541252	0.90[ASN][1000 genomes]
rs73541270	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73541286	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73541293	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73541296	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73541300	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73541301	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1022434	chr8:10866242-10916523	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
4	esv3438938	chr8:10888542-10893040	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	16 gene(s)	inside rSNPs	diseases
5	esv3447417	chr8:10889142-10892340	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10874400-10892800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:10880000-10896800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr8:10881400-10893200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr8:10883400-10899600	Weak transcription	Brain Anterior Caudate	brain
5	chr8:10884400-10892800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr8:10887800-10894800	Weak transcription	Fetal Stomach	stomach
7	chr8:10888400-10892600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr8:10889800-10892200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:10889800-10894000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr8:10889800-10910800	Weak transcription	HSMMtube	muscle
11	chr8:10890400-10892200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr8:10890400-10894000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr8:10890400-10895600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr8:10890400-10896800	Weak transcription	Spleen	Spleen
15	chr8:10890800-10892600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr8:10890800-10894800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:10891000-10892800	Weak transcription	Brain Angular Gyrus	brain
18	chr8:10891000-10893200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:10891000-10893800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr8:10891000-10894000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr8:10891200-10892000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr8:10891200-10892400	Weak transcription	Gastric	stomach
23	chr8:10891200-10894400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr8:10891800-10892000	ZNF genes & repeats	Stomach Smooth Muscle	stomach
25	chr8:10891800-10894000	Weak transcription	Pancreas	Pancrea

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