Variant report

Variant	rs6601549
Chromosome Location	chr8:10888135-10888136
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10886694..10889685-chr8:10905766..10907458,2	K562	blood:
2	chr8:10887222..10889685-chr8:10905766..10908616,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10092793	0.82[CEU][hapmap]
rs10100449	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10102241	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10110123	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10111872	1.00[CEU][hapmap];0.87[GIH][hapmap];0.91[TSI][hapmap];0.96[EUR][1000 genomes]
rs10283160	0.85[CEU][hapmap]
rs11250111	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11996027	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11998417	1.00[JPT][hapmap]
rs12335200	0.90[ASN][1000 genomes]
rs13438929	0.87[EUR][1000 genomes]
rs17152785	1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17152791	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17152793	1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17152795	1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17155406	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17725044	0.85[CEU][hapmap]
rs2001433	1.00[JPT][hapmap]
rs2898264	0.85[CEU][hapmap]
rs3021496	0.85[CEU][hapmap]
rs35539607	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36088662	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4141827	0.90[ASN][1000 genomes]
rs4841486	1.00[CHD][hapmap]
rs56665484	1.00[ASN][1000 genomes]
rs59008721	0.90[ASN][1000 genomes]
rs60039934	0.91[ASN][1000 genomes]
rs60514110	0.90[ASN][1000 genomes]
rs60680986	0.90[ASN][1000 genomes]
rs61027371	0.90[ASN][1000 genomes]
rs6601548	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6601550	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6983680	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6992269	0.85[CEU][hapmap]
rs6996735	0.96[EUR][1000 genomes]
rs7000431	1.00[JPT][hapmap]
rs7002523	0.85[CEU][hapmap]
rs7008855	1.00[CEU][hapmap]
rs7015045	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73541252	1.00[ASN][1000 genomes]
rs73541270	1.00[ASN][1000 genomes]
rs73541286	0.90[ASN][1000 genomes]
rs73541293	0.90[ASN][1000 genomes]
rs73541296	0.90[ASN][1000 genomes]
rs73541300	0.90[ASN][1000 genomes]
rs73541301	0.90[ASN][1000 genomes]
rs7822804	0.82[CEU][hapmap]
rs7826139	1.00[CEU][hapmap];0.86[TSI][hapmap];0.95[EUR][1000 genomes]
rs7827026	0.85[CEU][hapmap]
rs7838655	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7839837	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1022434	chr8:10866242-10916523	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10874400-10892800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:10875000-10890000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr8:10879600-10890000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr8:10879600-10890400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr8:10879800-10890600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:10880000-10890200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:10880000-10896800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr8:10880200-10890400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:10880200-10890400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr8:10880200-10890600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr8:10881400-10893200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr8:10883400-10899600	Weak transcription	Brain Anterior Caudate	brain
13	chr8:10884400-10892800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr8:10887200-10890200	Weak transcription	Pancreas	Pancrea
15	chr8:10887800-10894800	Weak transcription	Fetal Stomach	stomach

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