Variant report

Variant	rs17154930
Chromosome Location	chr7:107724441-107724442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:107720738..107723216-chr7:107724069..107727011,3	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10260756	1.00[CHD][hapmap]
rs11771064	1.00[CEU][hapmap]
rs17154848	1.00[CHD][hapmap]
rs17154865	1.00[CHD][hapmap]
rs17154878	1.00[CHD][hapmap]
rs6962826	1.00[CHD][hapmap]
rs9690688	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831089	chr7:107687618-107877240	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107700800-107733600	Weak transcription	Pancreas	Pancrea
2	chr7:107720400-107725000	Weak transcription	Ovary	ovary
3	chr7:107720600-107732000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr7:107721000-107734400	Weak transcription	Colon Smooth Muscle	Colon
5	chr7:107722200-107727600	Weak transcription	Fetal Intestine Large	intestine
6	chr7:107722400-107727000	Weak transcription	HepG2	liver
7	chr7:107723800-107725200	Enhancers	HSMMtube	muscle
8	chr7:107723800-107729600	Enhancers	K562	blood
9	chr7:107724000-107725200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:107724000-107725800	Enhancers	HUVEC	blood vessel
11	chr7:107724000-107726400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:107724200-107724600	Enhancers	Gastric	stomach
13	chr7:107724200-107725000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr7:107724200-107725200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:107724200-107725200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr7:107724200-107725200	Enhancers	Stomach Smooth Muscle	stomach
17	chr7:107724200-107725800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr7:107724200-107727600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr7:107724400-107725000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr7:107724400-107725000	Enhancers	A549	lung
21	chr7:107724400-107725000	Enhancers	HMEC	breast
22	chr7:107724400-107725000	Enhancers	NH-A	brain
23	chr7:107724400-107725200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr7:107724400-107725200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr7:107724400-107725200	Enhancers	Lung	lung
26	chr7:107724400-107725200	Enhancers	NHDF-Ad	bronchial
27	chr7:107724400-107725200	Enhancers	NHLF	lung

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