Variant report

Variant	rs17154878
Chromosome Location	chr7:107700544-107700545
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:107699191..107701387-chr7:107720831..107722439,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10226708	1.00[JPT][hapmap]
rs10253744	1.00[JPT][hapmap]
rs10257477	1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10260756	1.00[CHD][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10268853	1.00[JPT][hapmap]
rs10269369	1.00[JPT][hapmap]
rs1109110	1.00[JPT][hapmap]
rs11487091	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11487092	1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11974677	1.00[JPT][hapmap]
rs11974886	1.00[JPT][hapmap]
rs11976667	1.00[JPT][hapmap]
rs12334173	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134747	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154848	0.84[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17154865	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154870	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154911	1.00[JPT][hapmap]
rs17154930	1.00[CHD][hapmap]
rs28451593	1.00[EUR][1000 genomes]
rs6942816	1.00[JPT][hapmap]
rs6962826	0.84[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73424746	1.00[EUR][1000 genomes]
rs73424749	1.00[EUR][1000 genomes]
rs7801206	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7801775	1.00[JPT][hapmap]
rs7805768	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9690688	1.00[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831089	chr7:107687618-107877240	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
5	nsv1017114	chr7:107692403-107720162	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107686600-107703000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:107696600-107703000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr7:107696600-107703000	Weak transcription	NHLF	lung
4	chr7:107697000-107701400	Enhancers	Fetal Muscle Leg	muscle
5	chr7:107697600-107701600	Enhancers	Fetal Stomach	stomach
6	chr7:107698600-107720000	Weak transcription	Right Atrium	heart
7	chr7:107699400-107701200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:107699800-107700600	Enhancers	Ovary	ovary
9	chr7:107699800-107701000	Enhancers	Adipose Nuclei	Adipose
10	chr7:107699800-107701600	Enhancers	HSMMtube	muscle
11	chr7:107700000-107700800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:107700200-107700600	Enhancers	Fetal Lung	lung
13	chr7:107700200-107703200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr7:107700200-107708400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr7:107700400-107700800	Enhancers	Colon Smooth Muscle	Colon

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