Variant report

Variant	rs17154870
Chromosome Location	chr7:107698772-107698773
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10257477	1.00[EUR][1000 genomes]
rs10260756	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11487091	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11487092	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12334173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134747	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154848	1.00[ASN][1000 genomes]
rs17154865	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154878	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28451593	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6962826	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73424746	1.00[EUR][1000 genomes]
rs73424749	1.00[EUR][1000 genomes]
rs7801206	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7805768	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831089	chr7:107687618-107877240	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
5	nsv1017114	chr7:107692403-107720162	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107686600-107703000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:107696400-107699200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:107696600-107703000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:107696600-107703000	Weak transcription	NHLF	lung
5	chr7:107697000-107701400	Enhancers	Fetal Muscle Leg	muscle
6	chr7:107697600-107699000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr7:107697600-107701600	Enhancers	Fetal Stomach	stomach
8	chr7:107697800-107699200	Enhancers	Fetal Kidney	kidney
9	chr7:107698200-107698800	Enhancers	Fetal Lung	lung
10	chr7:107698600-107699800	Weak transcription	HSMMtube	muscle
11	chr7:107698600-107720000	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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