Variant report

Variant	rs10257477
Chromosome Location	chr7:107704688-107704689
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EBF1	chr7:107703767-107705123	GM12878	blood:	n/a	chr7:107704179-107704190

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:107677483..107679632-chr7:107703067..107705427,2	K562	blood:

Variant related genes	Relation type
LAMB4	TF binding region
ENSG00000091128	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10226708	0.94[ASW][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.89[MKK][hapmap];0.83[AFR][1000 genomes]
rs10253744	1.00[JPT][hapmap]
rs10260756	1.00[EUR][1000 genomes]
rs10268853	1.00[JPT][hapmap]
rs10269369	1.00[JPT][hapmap]
rs1109110	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11487091	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs11487092	1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11974677	1.00[JPT][hapmap]
rs11974886	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11976667	1.00[JPT][hapmap]
rs12334173	1.00[EUR][1000 genomes]
rs17134747	1.00[EUR][1000 genomes]
rs17154848	1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs17154865	1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17154870	1.00[EUR][1000 genomes]
rs17154878	1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17154911	1.00[JPT][hapmap]
rs28451593	1.00[EUR][1000 genomes]
rs6942816	1.00[JPT][hapmap]
rs6962826	1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs73424746	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73424749	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7801206	1.00[EUR][1000 genomes]
rs7801775	1.00[JPT][hapmap]
rs7805768	1.00[EUR][1000 genomes]
rs9690688	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831089	chr7:107687618-107877240	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
5	nsv1017114	chr7:107692403-107720162	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107698600-107720000	Weak transcription	Right Atrium	heart
2	chr7:107700200-107708400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr7:107700800-107733600	Weak transcription	Pancreas	Pancrea
4	chr7:107701000-107710000	Weak transcription	Adipose Nuclei	Adipose
5	chr7:107702800-107705400	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr7:107703400-107706600	Weak transcription	HUVEC	blood vessel
7	chr7:107703400-107706800	Weak transcription	Fetal Muscle Leg	muscle
8	chr7:107703400-107706800	Weak transcription	NH-A	brain
9	chr7:107703600-107708400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:107704000-107706000	Weak transcription	K562	blood
11	chr7:107704000-107706800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr7:107704400-107706200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:107704400-107706600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr7:107704400-107706800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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