Variant report

Variant	rs17154865
Chromosome Location	chr7:107696289-107696290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:107686762..107692628-chr7:107693774..107699382,6	K562	blood:
2	chr7:107693993..107696951-chr7:107697117..107699478,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10226708	1.00[JPT][hapmap]
rs10253744	1.00[JPT][hapmap]
rs10257477	1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10260756	0.83[ASW][hapmap];1.00[CHD][hapmap];0.85[LWK][hapmap];0.93[MKK][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10268853	1.00[JPT][hapmap]
rs10269369	1.00[JPT][hapmap]
rs1109110	1.00[JPT][hapmap]
rs11487091	1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11487092	0.82[ASW][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11974677	1.00[JPT][hapmap]
rs11974886	1.00[JPT][hapmap]
rs11976667	1.00[JPT][hapmap]
rs12334173	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134747	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154848	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs17154870	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154878	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154911	1.00[JPT][hapmap]
rs17154930	1.00[CHD][hapmap]
rs28451593	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6942816	1.00[JPT][hapmap]
rs6962826	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73424746	1.00[EUR][1000 genomes]
rs73424749	1.00[EUR][1000 genomes]
rs7801206	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7801775	1.00[JPT][hapmap]
rs7805768	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9690688	1.00[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831089	chr7:107687618-107877240	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
5	nsv1017114	chr7:107692403-107720162	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107686600-107703000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:107695600-107696600	Enhancers	Placenta	Placenta
3	chr7:107695600-107697000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr7:107695800-107696800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:107696000-107696400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:107696000-107696400	Flanking Active TSS	HepG2	liver
7	chr7:107696000-107696800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr7:107696000-107697000	Enhancers	Fetal Heart	heart
9	chr7:107696200-107696400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr7:107696200-107696400	Enhancers	HSMMtube	muscle
11	chr7:107696200-107696600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:107696200-107696600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:107696200-107696600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr7:107696200-107696600	Enhancers	Fetal Muscle Leg	muscle
15	chr7:107696200-107696600	Enhancers	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links