Variant report

Variant	rs6942816
Chromosome Location	chr7:107715658-107715659
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:107703724..107706377-chr7:107714515..107716129,2	MCF-7	breast:
2	chr7:107714760..107717212-chr7:107718559..107721674,3	K562	blood:
3	chr7:107712773..107718092-chr7:107719257..107721672,4	K562	blood:
4	chr7:107705898..107709867-chr7:107715433..107718240,3	K562	blood:

Variant related genes	Relation type
ENSG00000091128	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10226708	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10253744	1.00[CEU][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10257477	1.00[JPT][hapmap]
rs10268853	1.00[CEU][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10269369	1.00[CEU][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1109110	1.00[CEU][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11487091	1.00[JPT][hapmap]
rs11487092	1.00[JPT][hapmap]
rs11974677	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11974886	1.00[CEU][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11976667	1.00[CEU][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11978694	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17154848	1.00[JPT][hapmap]
rs17154865	1.00[JPT][hapmap]
rs17154878	1.00[JPT][hapmap]
rs17154911	1.00[CEU][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62468026	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6962826	1.00[JPT][hapmap]
rs73725319	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7798163	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7798165	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7801775	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7802055	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9690688	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831089	chr7:107687618-107877240	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
5	nsv1017114	chr7:107692403-107720162	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107698600-107720000	Weak transcription	Right Atrium	heart
2	chr7:107700800-107733600	Weak transcription	Pancreas	Pancrea
3	chr7:107707200-107718600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:107707200-107718600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr7:107712800-107718800	Weak transcription	NHEK	skin
6	chr7:107713200-107718800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr7:107713200-107719200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:107714200-107718600	Weak transcription	Adipose Nuclei	Adipose
9	chr7:107714400-107716600	Weak transcription	Fetal Lung	lung
10	chr7:107714400-107719400	Weak transcription	Colon Smooth Muscle	Colon
11	chr7:107714600-107716600	Weak transcription	K562	blood
12	chr7:107714600-107717000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr7:107714600-107717000	Weak transcription	Fetal Muscle Leg	muscle
14	chr7:107714600-107717000	Weak transcription	Fetal Stomach	stomach
15	chr7:107714600-107717000	Weak transcription	Lung	lung
16	chr7:107714600-107717800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr7:107714600-107718400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr7:107714600-107718600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr7:107714600-107718600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr7:107714600-107718600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr7:107714600-107720000	Weak transcription	Placenta	Placenta
22	chr7:107715200-107719000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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