Variant report

Variant	rs17156468
Chromosome Location	chr7:103472013-103472014
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103466010..103468744-chr7:103470404..103473260,3	K562	blood:
2	chr7:103462200..103464202-chr7:103470870..103473590,2	K562	blood:

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs12705161	0.91[EUR][1000 genomes]
rs12705162	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12705163	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs13223726	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13223833	0.87[CHB][hapmap];0.91[JPT][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13232518	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13232645	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13232747	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13232879	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13233184	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13233546	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13233763	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13234309	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13239553	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13241576	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13241764	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13243480	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13247246	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13247386	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17133113	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17133160	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs17156834	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2221785	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2237638	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2237639	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2237641	0.95[JPT][hapmap]
rs2237642	0.95[JPT][hapmap]
rs2283030	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2283031	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2283032	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2283033	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2283034	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2299387	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2299388	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2299389	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2299390	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2299391	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2299392	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2299394	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34147459	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34336617	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34356241	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34489535	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34833935	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34872530	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34958562	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35069465	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35093250	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35250471	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35462289	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35835163	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35963743	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3886301	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3886302	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4283	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57460337	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62482261	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62482263	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62482264	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62482265	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62482289	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62482298	0.81[ASN][1000 genomes]
rs62482299	0.81[ASN][1000 genomes]
rs6944294	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6964054	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6977666	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6979719	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71558655	0.85[EUR][1000 genomes]
rs71558656	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71558657	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71558658	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7777395	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7784567	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7784979	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7784991	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7791035	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7791481	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7794946	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7800597	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7803462	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7807415	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7809688	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs955319	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9648931	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9649266	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9791408	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9791440	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9792001	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1843940	chr7:103421702-103590285	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv934055	chr7:103462527-103473944	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103461200-103482400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:103466600-103481800	Weak transcription	K562	blood
3	chr7:103472000-103472200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:103472000-103473200	Strong transcription	HepG2	liver

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