Variant report

Variant	rs2237642
Chromosome Location	chr7:103520023-103520024
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103517969..103520327-chr7:103557139..103559343,2	K562	blood:
2	chr7:103514830..103517778-chr7:103519568..103522214,2	K562	blood:

Extended variants
information (count: 76 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10487173	0.87[CEU][hapmap]
rs12705162	1.00[YRI][hapmap]
rs12705163	1.00[YRI][hapmap]
rs13223833	0.86[JPT][hapmap]
rs13232645	0.87[CHD][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.92[MKK][hapmap]
rs13233546	0.86[JPT][hapmap]
rs13233763	0.86[JPT][hapmap];0.88[MEX][hapmap]
rs13234309	0.86[CEU][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs13239553	0.81[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs13241576	0.81[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13241764	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13243480	0.81[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs17133113	0.95[JPT][hapmap]
rs17133160	0.82[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17156468	0.95[JPT][hapmap]
rs17156834	0.81[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs2221785	0.95[JPT][hapmap]
rs2237638	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2237639	0.81[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2237640	1.00[CEU][hapmap];0.97[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2237641	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2283030	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2283031	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2283032	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2283033	0.86[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2283034	0.86[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2299387	0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2299388	0.81[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2299389	0.81[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2299390	0.81[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2299391	0.85[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs2299392	0.81[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2299394	0.81[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs34958562	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs35069465	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs35093250	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs35250471	0.82[AMR][1000 genomes]
rs3886301	0.82[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs3886302	0.83[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4283	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57460337	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60655664	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62482289	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62482298	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62482299	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62482324	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62482325	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62482327	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6944413	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6949057	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6964054	0.95[JPT][hapmap];1.00[YRI][hapmap]
rs6977666	0.86[CEU][hapmap];0.95[JPT][hapmap]
rs6979719	0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs71558655	0.88[AMR][1000 genomes]
rs71558656	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71558657	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71558658	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7777395	0.95[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7784567	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7784979	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7784991	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7791035	0.82[AMR][1000 genomes]
rs7791481	0.88[CEU][hapmap];0.80[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs7794946	0.81[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7800597	0.85[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs7803462	0.81[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7807415	0.81[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7809688	0.81[CHB][hapmap];0.87[CHD][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs955319	0.95[JPT][hapmap]
rs9648931	0.82[AMR][1000 genomes]
rs9649266	0.81[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs9791408	0.81[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9791440	0.81[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9792001	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1843940	chr7:103421702-103590285	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs2237642	MYL10	cis	parietal	SCAN
rs2237642	GNB2	cis	cerebellum	SCAN
rs2237642	MCM7	cis	parietal	SCAN
rs2237642	COPS6	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103519400-103520800	Enhancers	HepG2	liver
2	chr7:103519600-103521400	Enhancers	Brain Germinal Matrix	brain
3	chr7:103519800-103520200	Enhancers	K562	blood

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