Variant report

Variant	rs6949057
Chromosome Location	chr7:103525553-103525554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs13239553	0.82[AMR][1000 genomes]
rs13241576	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13241764	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13243480	0.82[AMR][1000 genomes]
rs17133160	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17156834	0.82[AMR][1000 genomes]
rs2237638	0.80[AMR][1000 genomes]
rs2237639	0.82[AMR][1000 genomes]
rs2237640	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2237641	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2237642	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2237644	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2283030	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2283031	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2283032	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2283033	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2283034	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2299387	0.82[AMR][1000 genomes]
rs2299388	0.82[AMR][1000 genomes]
rs2299389	0.80[AMR][1000 genomes]
rs2299390	0.82[AMR][1000 genomes]
rs2299392	0.82[AMR][1000 genomes]
rs2299394	0.82[AMR][1000 genomes]
rs34958562	0.82[AMR][1000 genomes]
rs35069465	0.82[AMR][1000 genomes]
rs35093250	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs35250471	0.82[AMR][1000 genomes]
rs3886301	0.82[AMR][1000 genomes]
rs3886302	0.82[AMR][1000 genomes]
rs4283	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57460337	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60655664	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62482289	0.82[AMR][1000 genomes]
rs62482298	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62482299	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62482324	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62482325	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62482327	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6944413	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6979719	0.82[AMR][1000 genomes]
rs71558655	0.88[AMR][1000 genomes]
rs71558656	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71558657	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71558658	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7777395	0.82[AMR][1000 genomes]
rs7784567	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7784979	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7784991	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7791035	0.82[AMR][1000 genomes]
rs7791481	0.82[AMR][1000 genomes]
rs7794946	0.82[AMR][1000 genomes]
rs7800597	0.82[AMR][1000 genomes]
rs7803462	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7807415	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7809688	0.82[AMR][1000 genomes]
rs9648931	0.82[AMR][1000 genomes]
rs9649266	0.82[AMR][1000 genomes]
rs9791408	0.82[AMR][1000 genomes]
rs9791440	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1843940	chr7:103421702-103590285	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103520800-103529200	Weak transcription	HepG2	liver
2	chr7:103524200-103526800	Weak transcription	K562	blood

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