Variant report
| Variant | rs62482325 |
|---|---|
| Chromosome Location | chr7:103532138-103532139 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:103532058..103533775-chr7:103563141..103565632,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs13241576 | 0.83[ASN][1000 genomes] |
| rs13241764 | 0.83[ASN][1000 genomes] |
| rs17133160 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2237640 | 0.98[EUR][1000 genomes] |
| rs2237641 | 0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2237642 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2237644 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2283030 | 0.83[ASN][1000 genomes] |
| rs2283031 | 0.84[ASN][1000 genomes] |
| rs2283032 | 0.84[ASN][1000 genomes] |
| rs2283033 | 0.85[ASN][1000 genomes] |
| rs2283034 | 0.85[ASN][1000 genomes] |
| rs35093250 | 0.82[ASN][1000 genomes] |
| rs4283 | 0.84[ASN][1000 genomes] |
| rs57460337 | 0.85[ASN][1000 genomes] |
| rs60655664 | 0.95[EUR][1000 genomes] |
| rs62482298 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs62482299 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs62482324 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62482327 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6944413 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6949057 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs71558656 | 0.86[ASN][1000 genomes] |
| rs71558657 | 0.86[ASN][1000 genomes] |
| rs71558658 | 0.86[ASN][1000 genomes] |
| rs7784567 | 0.82[ASN][1000 genomes] |
| rs7784979 | 0.82[ASN][1000 genomes] |
| rs7784991 | 0.82[ASN][1000 genomes] |
| rs7803462 | 0.82[ASN][1000 genomes] |
| rs7807415 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1843940 | chr7:103421702-103590285 | Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:103531000-103536600 | Weak transcription | K562 | blood |
| 2 | chr7:103531200-103546000 | Weak transcription | HepG2 | liver |
