Variant report

Variant	rs2237640
Chromosome Location	chr7:103519638-103519639
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:103517390..103519695-chr7:103666602..103669150,2	K562	blood:
2	chr7:103517969..103520327-chr7:103557139..103559343,2	K562	blood:
3	chr7:103514830..103517778-chr7:103519568..103522214,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10487173	0.87[CEU][hapmap]
rs12705162	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs12705163	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs13234309	0.86[CEU][hapmap]
rs13241576	0.80[EUR][1000 genomes]
rs13241764	0.80[EUR][1000 genomes]
rs17133160	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2237641	0.88[CEU][hapmap];0.97[GIH][hapmap];0.88[MEX][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2237642	1.00[CEU][hapmap];0.97[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2237644	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2283031	0.80[EUR][1000 genomes]
rs2283032	0.80[EUR][1000 genomes]
rs2283033	0.80[EUR][1000 genomes]
rs2283034	0.80[EUR][1000 genomes]
rs2299394	0.81[GIH][hapmap];0.82[TSI][hapmap]
rs3886301	0.82[CEU][hapmap]
rs4283	0.80[EUR][1000 genomes]
rs57460337	0.80[EUR][1000 genomes]
rs60655664	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62482298	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62482299	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62482324	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62482325	0.98[EUR][1000 genomes]
rs62482327	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6944413	1.00[EUR][1000 genomes]
rs6949057	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6977666	0.86[CEU][hapmap]
rs71558656	0.80[EUR][1000 genomes]
rs71558657	0.80[EUR][1000 genomes]
rs71558658	0.80[EUR][1000 genomes]
rs7784567	0.80[EUR][1000 genomes]
rs7784979	0.80[EUR][1000 genomes]
rs7784991	0.80[EUR][1000 genomes]
rs7791481	0.88[CEU][hapmap]
rs7803462	0.80[EUR][1000 genomes]
rs7807415	0.80[EUR][1000 genomes]
rs7809688	0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1843940	chr7:103421702-103590285	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs2237640	MYL10	cis	parietal	SCAN
rs2237640	GNB2	cis	cerebellum	SCAN
rs2237640	COPS6	cis	parietal	SCAN
rs2237640	MCM7	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103498200-103519800	Weak transcription	K562	blood
2	chr7:103519400-103520800	Enhancers	HepG2	liver
3	chr7:103519600-103521400	Enhancers	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links