Variant report

Variant	rs17158960
Chromosome Location	chr7:84000896-84000897
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10488587	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10488588	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10488593	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs16887708	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17158881	1.00[EUR][1000 genomes]
rs17158896	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17158907	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17158909	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17158912	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17158915	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17158923	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17158931	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17158953	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17158986	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159009	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159017	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159039	0.85[ASN][1000 genomes]
rs17159042	0.83[ASN][1000 genomes]
rs1922347	0.87[ASN][1000 genomes]
rs4728555	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4732552	0.85[ASN][1000 genomes]
rs4732553	0.83[ASN][1000 genomes]
rs4732556	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs542078	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60164110	1.00[EUR][1000 genomes]
rs60694347	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61049791	0.90[ASN][1000 genomes]
rs642153	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv2754468	chr7:83851249-84166749	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv888631	chr7:83911271-84010005	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1023848	chr7:83985028-84101774	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2761342	chr7:83985028-84101798	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83994600-84001200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:83994800-84001200	Weak transcription	NHDF-Ad	bronchial
3	chr7:83999400-84001000	Weak transcription	Osteobl	bone
4	chr7:83999800-84001200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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