Variant report

Variant	rs17159009
Chromosome Location	chr7:84019764-84019765
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:84014466..84016312-chr7:84018261..84020736,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10488587	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10488588	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10488593	0.86[CHB][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes]
rs16887708	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16887716	0.89[AMR][1000 genomes]
rs16887718	0.89[AMR][1000 genomes]
rs16887721	0.89[AMR][1000 genomes]
rs16887725	0.89[AMR][1000 genomes]
rs17158881	1.00[EUR][1000 genomes]
rs17158896	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17158907	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17158909	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17158912	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17158915	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17158923	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17158931	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17158953	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17158960	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17158986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159017	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159039	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17159042	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17159050	0.89[AMR][1000 genomes]
rs17159058	0.89[AMR][1000 genomes]
rs17159061	0.89[AMR][1000 genomes]
rs17159066	0.89[AMR][1000 genomes]
rs17159070	0.89[AMR][1000 genomes]
rs17159073	0.89[AMR][1000 genomes]
rs17159078	0.89[AMR][1000 genomes]
rs17159080	0.89[AMR][1000 genomes]
rs17159091	0.89[AMR][1000 genomes]
rs17159100	0.89[AMR][1000 genomes]
rs1922347	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4475410	0.89[AMR][1000 genomes]
rs4728555	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4732552	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4732553	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4732554	0.89[AMR][1000 genomes]
rs4732555	0.89[AMR][1000 genomes]
rs4732556	1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes]
rs542078	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60164110	1.00[EUR][1000 genomes]
rs60694347	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61049791	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs642153	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv2754468	chr7:83851249-84166749	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1023848	chr7:83985028-84101774	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2761342	chr7:83985028-84101798	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv534431	chr7:84001059-84138511	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84015800-84023000	Weak transcription	NHDF-Ad	bronchial
2	chr7:84018800-84019800	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links