Variant report
| Variant | rs642153 |
|---|---|
| Chromosome Location | chr7:83981616-83981617 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10488587 | 0.91[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10488588 | 0.91[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10488593 | 0.93[JPT][hapmap] |
| rs16887708 | 0.86[ASN][1000 genomes] |
| rs17158706 | 1.00[GIH][hapmap] |
| rs17158709 | 1.00[GIH][hapmap] |
| rs17158881 | 0.82[ASN][1000 genomes] |
| rs17158896 | 0.91[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17158907 | 0.91[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17158909 | 0.91[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17158912 | 0.91[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs17158915 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs17158923 | 0.91[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs17158924 | 0.92[AFR][1000 genomes] |
| rs17158931 | 0.91[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17158953 | 0.91[ASN][1000 genomes] |
| rs17158960 | 0.86[ASN][1000 genomes] |
| rs17158986 | 0.86[ASN][1000 genomes] |
| rs17159009 | 0.86[ASN][1000 genomes] |
| rs17159017 | 0.86[ASN][1000 genomes] |
| rs17159129 | 1.00[GIH][hapmap];0.89[MEX][hapmap] |
| rs4728555 | 0.86[ASN][1000 genomes] |
| rs4732556 | 0.93[JPT][hapmap] |
| rs542078 | 0.96[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs57307005 | 0.81[AFR][1000 genomes] |
| rs60164110 | 0.82[ASN][1000 genomes] |
| rs60694347 | 0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv529344 | chr7:83714286-84592857 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 2 | esv2754468 | chr7:83851249-84166749 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | esv1793815 | chr7:83909503-83997755 | Active TSS Enhancers Weak transcription Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv888631 | chr7:83911271-84010005 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv888632 | chr7:83958436-83993099 | Weak transcription Enhancers Flanking Active TSS Active TSS | n/a | n/a | inside rSNPs | diseases |
| 6 | esv3391887 | chr7:83981416-83987514 | Enhancers Flanking Active TSS Weak transcription Active TSS | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:83975600-83984600 | Weak transcription | NHDF-Ad | bronchial |
