Variant report

Variant	rs17164722
Chromosome Location	chr5:126969783-126969784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10041400	0.82[CEU][hapmap]
rs1031847	0.81[AMR][1000 genomes]
rs11743384	0.85[AMR][1000 genomes]
rs11746839	0.85[AMR][1000 genomes]
rs11746912	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12188818	0.85[AMR][1000 genomes]
rs13164325	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13166202	0.85[AMR][1000 genomes]
rs13175595	0.83[EUR][1000 genomes]
rs13182035	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13183092	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17164730	0.87[ASN][1000 genomes]
rs17764039	0.87[ASN][1000 genomes]
rs28527369	0.87[EUR][1000 genomes]
rs34700780	0.85[AMR][1000 genomes]
rs55681581	0.82[EUR][1000 genomes]
rs6595781	0.85[AMR][1000 genomes]
rs6595784	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6876031	0.83[AMR][1000 genomes]
rs72794209	0.83[AMR][1000 genomes]
rs73783935	0.87[ASN][1000 genomes]
rs73783936	0.87[ASN][1000 genomes]
rs73783937	0.87[ASN][1000 genomes]
rs73783938	0.87[ASN][1000 genomes]
rs73783939	0.87[ASN][1000 genomes]
rs7722896	0.82[EUR][1000 genomes]
rs7723560	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv830479	chr5:126849254-127053121	Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv830480	chr5:126964751-127124522	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17164722	CHSY3	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126968600-126970200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links