Variant report

Variant	rs13183092
Chromosome Location	chr5:126969693-126969694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:126968983..126970774-chr5:127145512..127147247,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10041400	0.82[CEU][hapmap]
rs11743384	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11746839	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11746912	0.92[AMR][1000 genomes]
rs12188818	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13154759	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13164325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13166202	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13175595	0.83[EUR][1000 genomes]
rs13182035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13190411	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17164722	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17605653	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28527369	0.87[EUR][1000 genomes]
rs34700780	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35111054	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35376602	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55681581	0.82[EUR][1000 genomes]
rs6595781	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6595784	0.93[EUR][1000 genomes]
rs67143037	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6876031	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72794203	1.00[ASN][1000 genomes]
rs72794209	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73337177	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7722896	0.82[EUR][1000 genomes]
rs7723560	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv830479	chr5:126849254-127053121	Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv830480	chr5:126964751-127124522	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126968600-126970200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links