Variant report

Variant	rs13154759
Chromosome Location	chr5:126962066-126962067
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1031847	0.90[EUR][1000 genomes]
rs11743384	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11746839	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11746912	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12188818	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13164325	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13166202	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13182035	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13183092	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13190411	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17605653	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34700780	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35111054	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35376602	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3851476	0.90[EUR][1000 genomes]
rs6595781	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67143037	1.00[ASN][1000 genomes]
rs6870347	0.91[EUR][1000 genomes]
rs6876031	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72794203	1.00[ASN][1000 genomes]
rs72794209	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73337177	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7723560	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv830479	chr5:126849254-127053121	Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126958000-126963200	Weak transcription	Fetal Lung	lung
2	chr5:126961000-126963000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:126962000-126962400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:126962000-126963200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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